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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 95862833.

The unstructured linker of Mlh1 contains a motif required for endonuclease function which is mutated in cancers

Kendall A. Torres, Felipe A. Calil, Ann L. Zhou, Matthew L. DuPrie, Christopher D. Putnam, Richard D. Kolodner

Proc Natl Acad Sci U S A. 2022 Oct 18; 119(42): e2212870119. Published online 2022 Oct 10. doi: 10.1073/pnas.2212870119

PMCID:: PMC9586283

Abstract Article PDF–1.7M

Select item 93392934.

Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes

Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees

Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092

PMCID:: PMC9339293

Abstract Article PDF–7.9M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84957416.

Experimental exchange of paralogous domains in the MLH family provides evidence of sub-functionalization after gene duplication

Christopher M Furman, Ryan Elbashir, Gianno Pannafino, Nathan L Clark, Eric Alani

G3 (Bethesda) 2021 Jun; 11(6): jkab111. Published online 2021 Apr 19. doi: 10.1093/g3journal/jkab111

PMCID:: PMC8495741

Abstract Article PDF–1.4M

Select item 84582767.

Rad27 and Exo1 function in different excision pathways for mismatch repair in Saccharomyces cerevisiae

Felipe A. Calil, Bin-Zhong Li, Kendall A. Torres, Katarina Nguyen, Nikki Bowen, Christopher D. Putnam, Richard D. Kolodner

Nat Commun. 2021; 12: 5568. Published online 2021 Sep 22. doi: 10.1038/s41467-021-25866-z

PMCID:: PMC8458276

Abstract Article PDF–1.0M

Select item 84500998.

Handcuffing intrinsically disordered regions in Mlh1–Pms1 disrupts mismatch repair

Christopher M Furman, Ting-Yi Wang, Qiuye Zhao, Kumar Yugandhar, Haiyuan Yu, Eric Alani

Nucleic Acids Res. 2021 Sep 20; 49(16): 9327–9341. Published online 2021 Aug 14. doi: 10.1093/nar/gkab694

PMCID:: PMC8450099

Abstract Article PDF–2.0M

Select item 82813879.

Ligation of newly replicated DNA controls the timing of DNA mismatch repair

Gloria X. Reyes, Anna Kolodziejczak, Lovely Jael Paul Solomon Devakumar, Takashi Kubota, Richard D. Kolodner, Christopher D. Putnam, Hans Hombauer

Curr Biol. Author manuscript; available in PMC 2021 Jul 15.

Published in final edited form as: Curr Biol. 2021 Mar 22; 31(6): 1268–1276.e6. Published online 2021 Jan 7. doi: 10.1016/j.cub.2020.12.018

PMCID:: PMC8281387

Abstract Article PDF–1.5M

Select item 773038810.

Identification of MLH2/hPMS1 dominant mutations that prevent DNA mismatch repair function

Gloria X. Reyes, Boyu Zhao, Tobias T. Schmidt, Kerstin Gries, Matthias Kloor, Hans Hombauer

Commun Biol. 2020; 3: 751. Published online 2020 Dec 10. doi: 10.1038/s42003-020-01481-4

PMCID:: PMC7730388

Abstract Article PDF–2.1M

Select item 772018311.

Exo1 recruits Cdc5 polo kinase to MutLγ to ensure efficient meiotic crossover formation

Aurore Sanchez, Céline Adam, Felix Rauh, Yann Duroc, Lepakshi Ranjha, Bérangère Lombard, Xiaojing Mu, Mélody Wintrebert, Damarys Loew, Alba Guarné, Stefano Gnan, Chun-Long Chen, Scott Keeney, Petr Cejka, Raphaël Guérois, Franz Klein, Jean-Baptiste Charbonnier, Valérie Borde

Proc Natl Acad Sci U S A. 2020 Dec 1; 117(48): 30577–30588. Published online 2020 Nov 16. doi: 10.1073/pnas.2013012117

PMCID:: PMC7720183

Abstract Article PDF–2.3M

Select item 771875112.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 728653413.

Yeast mismatch repair components are required for stable inheritance of gene silencing

Qian Liu, Xuefeng Zhu, Michelle Lindström, Yonghong Shi, Ju Zheng, Xinxin Hao, Claes M. Gustafsson, Beidong Liu

PLoS Genet. 2020 May; 16(5): e1008798. Published online 2020 May 29. doi: 10.1371/journal.pgen.1008798

PMCID:: PMC7286534

Abstract Article PDF–3.5M

Select item 714568314.

Inactivation of folylpolyglutamate synthetase Met7 results in genome instability driven by an increased dUTP/dTTP ratio

Tobias T Schmidt, Sushma Sharma, Gloria X Reyes, Anna Kolodziejczak, Tina Wagner, Brian Luke, Anders Hofer, Andrei Chabes, Hans Hombauer

Nucleic Acids Res. 2020 Jan 10; 48(1): 264–277. Published online 2019 Oct 24. doi: 10.1093/nar/gkz1006

PMCID:: PMC7145683

Abstract Article PDF–3.9M

Select item 683773915.

Identification of Exo1-Msh2-interaction motifs in DNA mismatch repair and new Msh2-binding partners

Eva M. Goellner, Christopher D. Putnam, William J. Graham V, Christine M. Rahal, Bin-Zhong Li, Richard D. Kolodner

Nat Struct Mol Biol. Author manuscript; available in PMC 2019 Nov 7.

Published in final edited form as: Nat Struct Mol Biol. 2018 Aug; 25(8): 650–659. Published online 2018 Jul 30. doi: 10.1038/s41594-018-0092-y

Correction in:: Nat Struct Mol Biol. 2019 Nov 4

PMCID:: PMC6837739

Abstract Article PDF–2.3M

Select item 671577416.

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis

Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos

Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022

PMCID:: PMC6715774

Abstract Article

Select item 639329617.

Intrinsically disordered regions regulate both catalytic and non-catalytic activities of the MutLα mismatch repair complex

Yoori Kim, Christopher M Furman, Carol M Manhart, Eric Alani, Ilya J Finkelstein

Nucleic Acids Res. 2019 Feb 28; 47(4): 1823–1835. Published online 2018 Dec 12. doi: 10.1093/nar/gky1244

PMCID:: PMC6393296

Abstract Article PDF–2.5M

Select item 629136618.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j