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Select item 102343981.

Mediator subunit MDT-15 promotes expression of propionic acid breakdown genes to prevent embryonic lethality in Caenorhabditis elegans

Grace Ying Shyen Goh, Arshia Beigi, Junran Yan, Kelsie R S Doering, Stefan Taubert

G3 (Bethesda) 2023 Jun; 13(6): jkad087. Published online 2023 Apr 19. doi: 10.1093/g3journal/jkad087

PMCID:: PMC10234398

Article PDF–639K

Select item 101674812.

Systems‐level transcriptional regulation of Caenorhabditis elegans metabolism

Shivani Nanda, Marc‐Antoine Jacques, Wen Wang, Chad L Myers, L Safak Yilmaz, Albertha JM Walhout

Mol Syst Biol. 2023 May; 19(5): e11443. Published online 2023 Mar 21. doi: 10.15252/msb.202211443

PMCID:: PMC10167481

Article PDF–1.6M

Select item 98170933.

C. elegans as a model for inter-individual variation in metabolism

Bennett W. Fox, Olga Ponomarova, Yong-Uk Lee, Gaotian Zhang, Gabrielle E. Giese, Melissa Walker, Nicole M. Roberto, Huimin Na, Pedro R. Rodrigues, Brian J. Curtis, Aiden R. Kolodziej, Timothy A. Crombie, Stefan Zdraljevic, L. Safak Yilmaz, Erik C. Andersen, Frank C. Schroeder, Albertha J.M. Walhout

Nature. Author manuscript; available in PMC 2023 Jan 6.

Published in final edited form as: Nature. 2022 Jul; 607(7919): 571–577. Published online 2022 Jul 6. doi: 10.1038/s41586-022-04951-3

PMCID:: PMC9817093

Article PDF–6.6M

Select item 95083364.

Bacterial diet modulates tamoxifen-induced death via host fatty acid metabolism

Cédric Diot, Aurian P. García-González, Andre F. Vieira, Melissa Walker, Megan Honeywell, Hailey Doyle, Olga Ponomarova, Yomari Rivera, Huimin Na, Hefei Zhang, Michael Lee, Carissa P. Olsen, Albertha J. M. Walhout

Nat Commun. 2022; 13: 5595. Published online 2022 Sep 23. doi: 10.1038/s41467-022-33299-5

PMCID:: PMC9508336

Article PDF–1.4M

Select item 94378485.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Article PDF–2.0M

Select item 90207166.

A modified TurboID approach identifies tissue-specific centriolar components in C. elegans

Elisabeth Holzer, Cornelia Rumpf-Kienzl, Sebastian Falk, Alexander Dammermann

PLoS Genet. 2022 Apr; 18(4): e1010150. Published online 2022 Apr 20. doi: 10.1371/journal.pgen.1010150

Correction in:: PLoS Genet. 2023 Feb; 19(2): e1010645.

PMCID:: PMC9020716

Article PDF–2.0M

Select item 88885987.

Reduced ech-6 expression attenuates fat-induced lifespan shortening in C. elegans

Yasmine J. Liu, Arwen W. Gao, Reuben L. Smith, Georges E. Janssens, Daan M. Panneman, Aldo Jongejan, Michel van Weeghel, Frédéric M. Vaz, Melissa J. Silvestrini, Louis R. Lapierre, Alyson W. MacInnes, Riekelt H. Houtkooper

Sci Rep. 2022; 12: 3350. Published online 2022 Mar 1. doi: 10.1038/s41598-022-07397-9

PMCID:: PMC8888598

Article PDF–6.3M

Select item 87531228.

Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes

Manusnan Suriyalaksh, Celia Raimondi, Abraham Mains, Anne Segonds-Pichon, Shahzabe Mukhtar, Sharlene Murdoch, Rebeca Aldunate, Felix Krueger, Roger Guimerà, Simon Andrews, Marta Sales-Pardo, Olivia Casanueva

iScience. 2022 Jan 21; 25(1): 103663. Published online 2021 Dec 20. doi: 10.1016/j.isci.2021.103663

PMCID:: PMC8753122

Article PDF–4.6M

Select item 84467939.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Article PDF–1.6M

Select item 840392210.

Genome-wide screen identifies curli amyloid fibril as a bacterial component promoting host neurodegeneration

Chenyin Wang, Chun Yin Lau, Fuqiang Ma, Chaogu Zheng

Proc Natl Acad Sci U S A. 2021 Aug 24; 118(34): e2106504118. Published online 2021 Aug 19. doi: 10.1073/pnas.2106504118

Correction in:: Proc Natl Acad Sci U S A. 2021 Oct 12; 118(41): e2116257118.

PMCID:: PMC8403922

Article PDF–2.5M

Select item 833118311.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Article PDF–8.5M

Select item 799517612.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Article PDF–1.0M

Select item 682614513.

The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans

Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun

Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012

PMCID:: PMC6826145

Article PDF–3.0M

Select item 621659014.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Article PDF–1.4M

Select item 494261215.

The RNA-binding protein repertoire of Arabidopsis thaliana

Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring

Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766

PMCID:: PMC4942612

Article PDF–1.2M

Select item 481177816.

Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states

Dan Tan, Qiang Li, Mei-Jun Zhang, Chao Liu, Chengying Ma, Pan Zhang, Yue-He Ding, Sheng-Bo Fan, Li Tao, Bing Yang, Xiangke Li, Shoucai Ma, Junjie Liu, Boya Feng, Xiaohui Liu, Hong-Wei Wang, Si-Min He, Ning Gao, Keqiong Ye, Meng-Qiu Dong, Xiaoguang Lei

eLife. 2016; 5: e12509. Published online 2016 Mar 8. doi: 10.7554/eLife.12509

PMCID:: PMC4811778

Article PDF–16M

Select item 458683817.

Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal

Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, Victor R. Ambros

Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): E5271–E5280. Published online 2015 Sep 8. doi: 10.1073/pnas.1506576112

PMCID:: PMC4586838

Article PDF–1.1M

Select item 384382218.

RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

Alper Akay, Ashley Craig, Nicolas Lehrbach, Mark Larance, Ehsan Pourkarimi, Jane E. Wright, Angus Lamond, Eric Miska, Anton Gartner

Open Biol. 2013 Nov; 3(11): 130151. doi: 10.1098/rsob.130151

PMCID:: PMC3843822

Article PDF–1.1M

Select item 365827719.

SH3 interactome conserves general function over specific form

Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader

Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9

PMCID:: PMC3658277

Article PDF–2.3M

Select item 360267220.

Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans

Yuru Zhang, Xiaoju Zou, Yihong Ding, Haizhen Wang, Xiaoyun Wu, Bin Liang

BMC Genomics. 2013; 14: 164. Published online 2013 Mar 12. doi: 10.1186/1471-2164-14-164

PMCID:: PMC3602672

Article PDF–1.8M

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