PMC Links for GEO Profiles (Select 33168371) - PMC

Select item 103207661.

A transcriptional cofactor regulatory network for the C. elegans intestine

Brent B Horowitz, Shivani Nanda, Albertha J M Walhout

G3 (Bethesda) 2023 Jul; 13(7): jkad096. Published online 2023 Apr 29. doi: 10.1093/g3journal/jkad096

PMCID:: PMC10320766

Select item 65039852.

Lineage context switches the function of a C. elegans Pax6 homolog in determining a neuronal fate

Julia P. Brandt, Mary Rossillo, Zhuo Du, David Ichikawa, Kristopher Barnes, Allison Chen, Marcus Noyes, Zhirong Bao, Niels Ringstad

Development. 2019 Apr 15; 146(8): dev168153. Published online 2019 Apr 15. doi: 10.1242/dev.168153

PMCID:: PMC6503985

Abstract Article

Select item 62165903.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 60618494.

Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Jonas Defoort, Yves Van de Peer, Vanessa Vermeirssen

Nucleic Acids Res. 2018 Jul 27; 46(13): 6480–6503. Published online 2018 Jun 5. doi: 10.1093/nar/gky468

PMCID:: PMC6061849

Abstract Article PDF–6.6M

Select item 47810225.

The C. elegans pharynx: a model for organogenesis.

Susan E Mango

WormBook. 2007 : 1–26. Published online 2007 Jan 22. doi: 10.1895/wormbook.1.129.1

PMCID:: PMC4781022

Abstract Article

Select item 41250836.

The Translational Regulators GCN-1 and ABCF-3 Act Together to Promote Apoptosis in C. elegans

Takashi Hirose, H. Robert Horvitz

PLoS Genet. 2014 Aug; 10(8): e1004512. Published online 2014 Aug 7. doi: 10.1371/journal.pgen.1004512

PMCID:: PMC4125083

Abstract Article PDF–1.8M

Select item 37944397.

Extensive Rewiring and Complex Evolutionary Dynamics in a C. elegans Multiparameter Transcription Factor Network

John S. Reece-Hoyes, Carles Pons, Alos Diallo, Akihiro Mori, Shaleen Shrestha, Sreenath Kadreppa, Justin Nelson, Stephanie DiPrima, Amelie Dricot, Bryan R. Lajoie, Philippe Souza Moraes Ribeiro, Matthew T. Weirauch, David E. Hill, Timothy R. Hughes, Chad L. Myers, Albertha J.M. Walhout

Mol Cell. Author manuscript; available in PMC 2013 Oct 10.

Published in final edited form as: Mol Cell. 2013 Jul 11; 51(1): 116–127. Published online 2013 Jun 20. doi: 10.1016/j.molcel.2013.05.018

PMCID:: PMC3794439

Abstract Article PDF–5.2M

Select item 37481528.

An Sp1 transcription factor coordinates caspase-dependent and -independent apoptotic pathways

Takashi Hirose, H. Robert Horvitz

Nature. Author manuscript; available in PMC 2014 Feb 15.

Published in final edited form as: Nature. 2013 Aug 15; 500(7462): 354–358. Published online 2013 Jul 14. doi: 10.1038/nature12329

PMCID:: PMC3748152

Abstract Article PDF–1.7M

Select item 31020779.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 305792310.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 293260111.

Six and Eya promote apoptosis through direct transcriptional activation of the proapoptotic BH3-only gene egl-1 in Caenorhabditis elegans

Takashi Hirose, Brendan D. Galvin, H. Robert Horvitz

Proc Natl Acad Sci U S A. 2010 Aug 31; 107(35): 15479–15484. Published online 2010 Aug 16. doi: 10.1073/pnas.1010023107

PMCID:: PMC2932601

Abstract Article PDF–1.4M

Select item 270369212.

A conserved Six-Eya cassette acts downstream of Wnt signaling to direct non-myogenic versus myogenic fates in the C. elegans postembryonic mesoderm

Nirav M. Amin, Sung-Eun Lim, Herong Shi, Tiffany L. Chan, Jun Liu

Dev Biol. Author manuscript; available in PMC 2010 Jul 15.

Published in final edited form as: Dev Biol. 2009 Jul 15; 331(2): 350–360. Published online 2009 May 8. doi: 10.1016/j.ydbio.2009.05.538

PMCID:: PMC2703692

Abstract Article PDF–1.9M

Select item 169894913.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

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