PMC Links for GEO Profiles (Select 33477208) - PMC

Tim Pollex, Adam Rabinowitz, Maria Cristina Gambetta, Raquel Marco-Ferreres, Rebecca R. Viales, Aleksander Jankowski, Christoph Schaub, Eileen E. M. Furlong

Nat Genet. 2024; 56(4): 686–696. Published online 2024 Mar 11. doi: 10.1038/s41588-024-01678-x

PMCID:: PMC11018526

Abstract Article PDF–7.7M

Select item 109836694.

The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality

Sofia Kamalyan, Olga Kyrchanova, Natalia Klimenko, Valentin Babosha, Yulia Vasileva, Elena Belova, Dariya Fursenko, Oksana Maksimenko, Pavel Georgiev

Epigenetics Chromatin. 2024; 17: 9. Published online 2024 Apr 1. doi: 10.1186/s13072-024-00534-w

PMCID:: PMC10983669

Abstract Article PDF–6.9M

Select item 106480815.

The N-Terminal Part of Drosophila CP190 Is a Platform for Interaction with Multiple Architectural Proteins

Anton Golovnin, Larisa Melnikova, Valentin Babosha, Galina V. Pokholkova, Ivan Slovohotov, Anastasia Umnova, Oksana Maksimenko, Igor F. Zhimulev, Pavel Georgiev

Int J Mol Sci. 2023 Nov; 24(21): 15917. Published online 2023 Nov 2. doi: 10.3390/ijms242115917

PMCID:: PMC10648081

Abstract Article PDF–5.5M

Select item 105904266.

3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription

Olivier Messina, Flavien Raynal, Julian Gurgo, Jean-Bernard Fiche, Vera Pancaldi, Marcelo Nollmann

Nat Commun. 2023; 14: 6678. Published online 2023 Oct 21. doi: 10.1038/s41467-023-42485-y

PMCID:: PMC10590426

Abstract Article PDF–3.6M

Select item 105293647.

Chromosome-level organization of the regulatory genome in the Drosophila nervous system

Giriram Mohana, Julien Dorier, Xiao Li, Marion Mouginot, Rebecca C. Smith, Héléna Malek, Marion Leleu, Daniel Rodriguez, Jenisha Khadka, Patrycja Rosa, Pascal Cousin, Christian Iseli, Simon Restrepo, Nicolas Guex, Brian D. McCabe, Aleksander Jankowski, Michael S. Levine, Maria Cristina Gambetta

Cell. Author manuscript; available in PMC 2024 Aug 31.

Published in final edited form as: Cell. 2023 Aug 31; 186(18): 3826–3844.e26. Published online 2023 Aug 2. doi: 10.1016/j.cell.2023.07.008

PMCID:: PMC10529364

Abstract Article PDF–5.0M

Select item 105284338.

Localization of the Drosophila pioneer factor GAF to subnuclear foci is driven by DNA binding and required to silence satellite repeat expression

Marissa. M. Gaskill, Isabella V. Soluri, Annemarie E. Branks, Alan P. Boka, Michael R. Stadler, Katherine Vietor, Hao-Yu S. Huang, Tyler J. Gibson, Apratim Mukherjee, Mustafa Mir, Shelby A. Blythe, Melissa M. Harrison

Dev Cell. Author manuscript; available in PMC 2024 Sep 11.

Published in final edited form as: Dev Cell. 2023 Sep 11; 58(17): 1610–1624.e8. Published online 2023 Jul 20. doi: 10.1016/j.devcel.2023.06.010

PMCID:: PMC10528433

Abstract Article PDF–3.6M

Select item 100402179.

Nucleoporins facilitate ORC loading onto chromatin

Logan Richards, Christopher L. Lord, Mary Lauren Benton, John A. Capra, Jared T. Nordman

Cell Rep. Author manuscript; available in PMC 2023 Mar 26.

Published in final edited form as: Cell Rep. 2022 Nov 8; 41(6): 111590. doi: 10.1016/j.celrep.2022.111590

PMCID:: PMC10040217

Abstract Article PDF–1.8M

Select item 991788910.

Mechanisms of Interaction between Enhancers and Promoters in Three Drosophila Model Systems

Olga Kyrchanova, Vladimir Sokolov, Pavel Georgiev

Int J Mol Sci. 2023 Feb; 24(3): 2855. Published online 2023 Feb 2. doi: 10.3390/ijms24032855

PMCID:: PMC9917889

Abstract Article PDF–2.2M

Select item 989767211.

CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles

Gabriel R. Cavalheiro, Charles Girardot, Rebecca R. Viales, Tim Pollex, T. B. Ngoc Cao, Perrine Lacour, Songjie Feng, Adam Rabinowitz, Eileen E. M. Furlong

Sci Adv. 2023 Feb; 9(5): eade1085. Published online 2023 Feb 3. doi: 10.1126/sciadv.ade1085

PMCID:: PMC9897672

Abstract Article PDF–2.5M

Select item 989766812.

Topological screen identifies hundreds of Cp190- and CTCF-dependent Drosophila chromatin insulator elements

Tatyana G. Kahn, Mikhail Savitsky, Chikuan Kuong, Caroline Jacquier, Giacomo Cavalli, Jia-Ming Chang, Yuri B. Schwartz

Sci Adv. 2023 Feb; 9(5): eade0090. Published online 2023 Feb 3. doi: 10.1126/sciadv.ade0090

PMCID:: PMC9897668

Abstract Article PDF–1.6M

Select item 975100813.

Mechanisms of enhancer-promoter communication and chromosomal architecture in mammals and Drosophila

Olga V. Kyrchanova, Oleg V. Bylino, Pavel G. Georgiev

Front Genet. 2022; 13: 1081088. Published online 2022 Dec 1. doi: 10.3389/fgene.2022.1081088

PMCID:: PMC9751008

Abstract Article PDF–975K

Select item 971343114.

Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila

Kate Ding, Elizabeth C Barretto, Michael Johnston, Byoungchun Lee, Marco Gallo, Savraj S Grewal

G3 (Bethesda) 2022 Dec; 12(12): jkac263. Published online 2022 Oct 6. doi: 10.1093/g3journal/jkac263

PMCID:: PMC9713431

Abstract Article PDF–1.0M

Select item 961372115.

The Variable CTCF Site from Drosophila melanogasterUbx Gene is Redundant and Has no Insulator Activity

A. N. Ibragimov, O. V. Bylino, O. V. Kyrchanova, Y. V. Shidlovskii, R. White, P. Schedl, P. G. Georgiev

Dokl Biochem Biophys. 2022; 505(1): 173–175. Published online 2022 Aug 29. doi: 10.1134/S1607672922040044

Correction in:: Dokl Biochem Biophys. 2022; 507(1): 391.

PMCID:: PMC9613721

Abstract Article PDF–716K

Select item 945463616.

Drosophila as a Model for Human Viral Neuroinfections

Ilena Benoit, Domenico Di Curzio, Alberto Civetta, Renée N. Douville

Cells. 2022 Sep; 11(17): 2685. Published online 2022 Aug 29. doi: 10.3390/cells11172685

PMCID:: PMC9454636

Abstract Article PDF–2.1M

Select item 923216117.

Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos

Ashley R. Albright, Michael R. Stadler, Michael B. Eisen

PLoS One. 2022; 17(6): e0270471. Published online 2022 Jun 24. doi: 10.1371/journal.pone.0270471

PMCID:: PMC9232161

Abstract Article PDF–1.7M

Select item 910630218.

Essential role of Cp190 in physical and regulatory boundary formation

Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta

Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834

PMCID:: PMC9106302

Abstract Article PDF–8.3M

Select item 891710119.

Fragments of the Fab-3 and Fab-4 Boundaries of the Drosophila melanogaster Bithorax Complex That Include CTCF Sites Are not Effective Insulators

O. V. Kyrchanova, N. Y. Postika, V. V. Sokolov, P. G. Georgiev

Dokl Biochem Biophys. 2022; 502(1): 21–24. Published online 2022 Mar 11. doi: 10.1134/S1607672922010069

PMCID:: PMC8917101

Abstract Article PDF–693K

Select item 886329720.

Transcriptional Regulators of Ecdysteroid Biosynthetic Enzymes and Their Roles in Insect Development

Takumi Kamiyama, Ryusuke Niwa

Front Physiol. 2022; 13: 823418. Published online 2022 Feb 8. doi: 10.3389/fphys.2022.823418

PMCID:: PMC8863297

Abstract Article PDF–1.4M

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