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Select item 107633631.

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network

George Hunt, Roshan Vaid, Sergei Pirogov, Alexander Pfab, Christoph Ziegenhain, Rickard Sandberg, Johan Reimegård, Mattias Mannervik

Genome Biol. 2024; 25: 2. Published online 2024 Jan 2. doi: 10.1186/s13059-023-03135-0

PMCID:: PMC10763363

Abstract Article PDF–9.8M

Select item 107044872.

Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm

Jingjing Sun, Chen Zhang, Fan Gao, Angelike Stathopoulos

Cell Rep. Author manuscript; available in PMC 2023 Dec 8.

Published in final edited form as: Cell Rep. 2023 Oct 31; 42(10): 113289. Published online 2023 Oct 19. doi: 10.1016/j.celrep.2023.113289

PMCID:: PMC10704487

Abstract Article PDF–2.8M

Select item 102438763.

Transcriptional and Epigenetic Regulation of Temporal Patterning in Neural Progenitors

Alokananda Ray, Hailun Zhu, Andrew Ding, Xin Li

Dev Biol. Author manuscript; available in PMC 2023 Jun 6.

Published in final edited form as: Dev Biol. 2022 Jan; 481: 116–128. Published online 2021 Oct 16. doi: 10.1016/j.ydbio.2021.10.006

PMCID:: PMC10243876

Abstract Article PDF–1.2M

Select item 102380944.

Shared enhancer gene regulatory networks between wound and oncogenic programs

Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne-Kathrin Classen, Stein Aerts

eLife. 2023; 12: e81173. Published online 2023 May 3. doi: 10.7554/eLife.81173

PMCID:: PMC10238094

Abstract Article PDF–8.8M

Select item 101559335.

Axon targeting of Drosophila medulla projection neurons requires diffusible Netrin and is coordinated with neuroblast temporal patterning

Yu Zhang, Scott Lowe, Andrew Z. Ding, Xin Li

Cell Rep. Author manuscript; available in PMC 2023 May 3.

Published in final edited form as: Cell Rep. 2023 Mar 28; 42(3): 112144. Published online 2023 Feb 22. doi: 10.1016/j.celrep.2023.112144

PMCID:: PMC10155933

Abstract Article PDF–4.2M

Select item 101057366.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 100837047.

Cell-specific occupancy dynamics between the pioneer-like factor Opa/ZIC and Ocelliless/OTX regulate early head development in embryos

Kelli D. Fenelon, Fan Gao, Priyanshi Borad, Shiva Abbasi, Lior Pachter, Theodora Koromila

Front Cell Dev Biol. 2023; 11: 1126507. Published online 2023 Mar 27. doi: 10.3389/fcell.2023.1126507

PMCID:: PMC10083704

Abstract Article PDF–3.4M

Select item 100658028.

A timer gene network is spatially regulated by the terminal system in the Drosophila embryo

Erik Clark, Margherita Battistara, Matthew A Benton

eLife. 2022; 11: e78902. Published online 2022 Dec 16. doi: 10.7554/eLife.78902

PMCID:: PMC10065802

Abstract Article PDF–13M

Select item 94271159.

A Notch-dependent transcriptional mechanism controls expression of temporal patterning factors in Drosophila medulla

Alokananda Ray, Xin Li

eLife. 2022; 11: e75879. Published online 2022 Aug 30. doi: 10.7554/eLife.75879

PMCID:: PMC9427115

Abstract Article PDF–32M

Select item 933649510.

Chromatin and transcriptomic profiling uncover dysregulation of the Tip60 HAT/HDAC2 epigenomic landscape in the neurodegenerative brain

Mariah Beaver, Bhanu Chandra Karisetty, Haolin Zhang, Akanksha Bhatnagar, Ellen Armour, Visha Parmar, Reshma Brown, Merry Xiang, Felice Elefant

Epigenetics. 2022; 17(7): 786–807. Published online 2021 Aug 9. doi: 10.1080/15592294.2021.1959742

PMCID:: PMC9336495

Abstract Article PDF–3.5M

Select item 911640311.

Cutting edge technologies expose the temporal regulation of neurogenesis in the Drosophila nervous system

Makoto Sato, Takumi Suzuki

Fly (Austin) 2022; 16(1): 222–232. Published online 2022 May 13. doi: 10.1080/19336934.2022.2073158

PMCID:: PMC9116403

Abstract Article PDF–889K

Select item 907425612.

A complete temporal transcription factor series in the fly visual system

Nikolaos Konstantinides, Isabel Holguera, Anthony M. Rossi, Aristides Escobar, Liébaut Dudragne, Yen-Chung Chen, Thinh Tran, Azalia Martinez Jaimes, Mehmet Neset Özel, Félix Simon, Zhiping Shao, Nadejda M. Tsankova, John F. Fullard, Uwe Walldorf, Panos Roussos, Claude Desplan

Nature. Author manuscript; available in PMC 2022 Oct 6.

Published in final edited form as: Nature. 2022 Apr; 604(7905): 316–322. Published online 2022 Apr 6. doi: 10.1038/s41586-022-04564-w

PMCID:: PMC9074256

Abstract Article PDF–5.5M

Select item 898159013.

Integration of Spatial and Temporal Patterning in the Invertebrate and Vertebrate Nervous System

Yen-Chung Chen, Nikolaos Konstantinides

Front Neurosci. 2022; 16: 854422. Published online 2022 Mar 22. doi: 10.3389/fnins.2022.854422

PMCID:: PMC8981590

Abstract Article PDF–2.1M

Select item 893100214.

Maintenance of mitochondrial integrity in midbrain dopaminergic neurons governed by a conserved developmental transcription factor

Federico Miozzo, Eva P. Valencia-Alarcón, Luca Stickley, Michaëla Majcin Dorcikova, Francesco Petrelli, Damla Tas, Nicolas Loncle, Irina Nikonenko, Peter Bou Dib, Emi Nagoshi

Nat Commun. 2022; 13: 1426. Published online 2022 Mar 17. doi: 10.1038/s41467-022-29075-0

PMCID:: PMC8931002

Abstract Article PDF–6.9M

Select item 891370015.

A comprehensive temporal patterning gene network in Drosophila medulla neuroblasts revealed by single-cell RNA sequencing

Hailun Zhu, Sihai Dave Zhao, Alokananda Ray, Yu Zhang, Xin Li

Nat Commun. 2022; 13: 1247. Published online 2022 Mar 10. doi: 10.1038/s41467-022-28915-3

PMCID:: PMC8913700

Abstract Article PDF–11M

Select item 869397716.

A dual role for DNA binding by Runt in activation and repression of sloppy paired transcription

Lisa Prazak, Yasuno Iwasaki, Ah-Ram Kim, Konstantin Kozlov, Kevin King, J. Peter Gergen

Mol Biol Cell. 2021 Nov 1; 32(21): ar26. doi: 10.1091/mbc.E20-08-0509

PMCID:: PMC8693977

Abstract Article PDF–3.0M

Select item 866448617.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 855843718.

Hox Proteins in the Regulation of Muscle Development

Gabriela Poliacikova, Corinne Maurel-Zaffran, Yacine Graba, Andrew J. Saurin

Front Cell Dev Biol. 2021; 9: 731996. Published online 2021 Oct 18. doi: 10.3389/fcell.2021.731996

PMCID:: PMC8558437

Abstract Article PDF–1.1M

Select item 851628919.

Patterning with clocks and genetic cascades: Segmentation and regionalization of vertebrate versus insect body plans

Margarete Diaz-Cuadros, Olivier Pourquié, Ezzat El-Sherif

PLoS Genet. 2021 Oct; 17(10): e1009812. Published online 2021 Oct 14. doi: 10.1371/journal.pgen.1009812

PMCID:: PMC8516289

Abstract Article PDF–1.4M

Select item 813928720.

The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis

Nigel S. Michki, Ye Li, Kayvon Sanjasaz, Yimeng Zhao, Fred Y. Shen, Logan A. Walker, Wenjia Cao, Cheng-Yu Lee, Dawen Cai

Cell Rep. Author manuscript; available in PMC 2021 May 21.

Published in final edited form as: Cell Rep. 2021 Apr 27; 35(4): 109039. doi: 10.1016/j.celrep.2021.109039

PMCID:: PMC8139287

Abstract Article PDF–1.6M

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