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Select item 114662821.

Differential regulation of the proteome and phosphoproteome along the dorso-ventral axis of the early Drosophila embryo

Juan Manuel Gomez, Hendrik Nolte, Elisabeth Vogelsang, Bipasha Dey, Michiko Takeda, Girolamo Giudice, Miriam Faxel, Theresa Haunold, Alina Cepraga, Robert P Zinzen, Marcus Krüger, Evangelia Petsalaki, Yu-Chiun Wang, Maria Leptin

eLife. 2024; 13: e99263. Published online 2024 Sep 2. doi: 10.7554/eLife.99263

PMCID:: PMC11466282

Abstract Article PDF–11M

Select item 112613752.

Protein-intrinsic properties and context-dependent effects regulate pioneer-factor binding and function

Tyler J. Gibson, Elizabeth D. Larson, Melissa M. Harrison

Nat Struct Mol Biol. Author manuscript; available in PMC 2024 Dec 1.

Published in final edited form as: Nat Struct Mol Biol. 2024 Mar; 31(3): 548–558. Published online 2024 Feb 16. doi: 10.1038/s41594-024-01231-8

PMCID:: PMC11261375

Abstract Article PDF–5.5M

Select item 111470323.

Germline development in vertebrates and invertebrates

E. E. Saffman, P. Lasko

Cell Mol Life Sci. 1999 Jul; 55(8-9): 1141–1163. doi: 10.1007/s000180050363

PMCID:: PMC11147032

Abstract Article PDF–698K

Select item 110814944.

Polarised cell intercalation during Drosophila axis extension is robust to an orthogonal pull by the invaginating mesoderm

Claire M. Lye, Guy B. Blanchard, Jenny Evans, Alexander Nestor-Bergmann, Bénédicte Sanson

PLoS Biol. 2024 Apr; 22(4): e3002611. Published online 2024 Apr 29. doi: 10.1371/journal.pbio.3002611

PMCID:: PMC11081494

Abstract Article PDF–4.1M

Select item 110729855.

The relationship between muscle stem cells and motor neurons

Monika Zmojdzian, Krzysztof Jagla

Cell Mol Life Sci. 2021 Jun; 78(12): 5043–5049. Published online 2021 Apr 16. doi: 10.1007/s00018-021-03838-2

PMCID:: PMC11072985

Abstract Article PDF–1.0M

Select item 109609906.

Transcription factor expression landscape in Drosophila embryonic cell lines

Robert A. Drewell, Daniel Klonaros, Jacqueline M. Dresch

BMC Genomics. 2024; 25: 307. Published online 2024 Mar 23. doi: 10.1186/s12864-024-10241-1

PMCID:: PMC10960990

Abstract Article PDF–4.0M

Select item 108258857.

Large analysis of genetic manipulations reveals an inverse correlation between initial alcohol resistance and rapid tolerance phenotypes

Maggie M. Chvilicek, Alexandra Seguin, Daniel R. Lathen, Iris Titos, Pearl N. Cummins‐Beebee, Miguel A. Pabon, Maša Miščević, Emily Nickel, Collin B. Merrill, Aylin R. Rodan, Adrian Rothenfluh

Genes Brain Behav. 2024 Feb; 23(1): e12884. Published online 2024 Jan 30. doi: 10.1111/gbb.12884

PMCID:: PMC10825885

Abstract Article PDF–1.7M

Select item 107633638.

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network

George Hunt, Roshan Vaid, Sergei Pirogov, Alexander Pfab, Christoph Ziegenhain, Rickard Sandberg, Johan Reimegård, Mattias Mannervik

Genome Biol. 2024; 25: 2. Published online 2024 Jan 2. doi: 10.1186/s13059-023-03135-0

PMCID:: PMC10763363

Abstract Article PDF–9.8M

Select item 107044879.

Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm

Jingjing Sun, Chen Zhang, Fan Gao, Angelike Stathopoulos

Cell Rep. Author manuscript; available in PMC 2023 Dec 8.

Published in final edited form as: Cell Rep. 2023 Oct 31; 42(10): 113289. Published online 2023 Oct 19. doi: 10.1016/j.celrep.2023.113289

PMCID:: PMC10704487

Abstract Article PDF–2.8M

Select item 1069306610.

Transcriptome analysis reveals temporally regulated genetic networks during Drosophila border cell collective migration

Emily Burghardt, Jessica Rakijas, Antariksh Tyagi, Pralay Majumder, Bradley J.S.C. Olson, Jocelyn A. McDonald

BMC Genomics. 2023; 24: 728. Published online 2023 Dec 1. doi: 10.1186/s12864-023-09839-8

PMCID:: PMC10693066

Abstract Article PDF–12M

Select item 1065646311.

NaNuTrap: a technique for in vivo cell nucleus labelling using nanobodies

Zsuzsa Ákos, Leslie Dunipace, Angelike Stathopoulos

Development. 2021 Sep 15; 148(18): dev199822. Published online 2021 Sep 1. doi: 10.1242/dev.199822

PMCID:: PMC10656463

Abstract Article

Select item 1059220312.

Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation

Kaelan J. Brennan, Melanie Weilert, Sabrina Krueger, Anusri Pampari, Hsiao-yun Liu, Ally W.H. Yang, Jason A. Morrison, Timothy R. Hughes, Christine A. Rushlow, Anshul Kundaje, Julia Zeitlinger

Dev Cell. Author manuscript; available in PMC 2023 Oct 23.

Published in final edited form as: Dev Cell. 2023 Oct 9; 58(19): 1898–1916.e9. Published online 2023 Aug 8. doi: 10.1016/j.devcel.2023.07.007

PMCID:: PMC10592203

Abstract Article PDF–3.4M

Select item 1026314413.

Azimuthal invariance to looming stimuli in the Drosophila giant fiber escape circuit

HyoJong Jang, David P. Goodman, Jessica Ausborn, Catherine R. von Reyn

J Exp Biol. 2023 Apr 15; 226(8): jeb244790. Published online 2023 Apr 20. doi: 10.1242/jeb.244790

PMCID:: PMC10263144

Abstract Article

Select item 1023809414.

Shared enhancer gene regulatory networks between wound and oncogenic programs

Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne-Kathrin Classen, Stein Aerts

eLife. 2023; 12: e81173. Published online 2023 May 3. doi: 10.7554/eLife.81173

PMCID:: PMC10238094

Abstract Article PDF–8.8M

Select item 1007891715.

A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi

William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker

Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004

PMCID:: PMC10078917

Abstract Article PDF–18M

Select item 1006977416.

FGF signaling promotes spreading of fat body precursors necessary for adult adipogenesis in Drosophila

Yuting Lei, Yuwei Huang, Ke Yang, Xueya Cao, Yuzhao Song, Enrique Martín-Blanco, José Carlos Pastor-Pareja

PLoS Biol. 2023 Mar; 21(3): e3002050. Published online 2023 Mar 22. doi: 10.1371/journal.pbio.3002050

PMCID:: PMC10069774

Abstract Article PDF–7.0M

Select item 996352717.

Curvature gradient drives polarized tissue flow in the Drosophila embryo

Emily W. Gehrels, Bandan Chakrabortty, Marc-Eric Perrin, Matthias Merkel, Thomas Lecuit

Proc Natl Acad Sci U S A. 2023 Feb 7; 120(6): e2214205120. Published online 2023 Feb 1. doi: 10.1073/pnas.2214205120

PMCID:: PMC9963527

Abstract Article PDF–2.5M

Select item 994090918.

Geometric control of myosin II orientation during axis elongation

Matthew F Lefebvre, Nikolas H Claussen, Noah P Mitchell, Hannah J Gustafson, Sebastian J Streichan

eLife. 2023; 12: e78787. Published online 2023 Jan 30. doi: 10.7554/eLife.78787

PMCID:: PMC9940909

Abstract Article PDF–15M

Select item 986017319.

Enhancer architecture and chromatin accessibility constrain phenotypic space during Drosophila development

Rafael Galupa, Gilberto Alvarez-Canales, Noa Ottilie Borst, Timothy Fuqua, Lautaro Gandara, Natalia Misunou, Kerstin Richter, Mariana R.P. Alves, Esther Karumbi, Melinda Liu Perkins, Tin Kocijan, Christine A. Rushlow, Justin Crocker

Dev Cell. 2023 Jan 9; 58(1): 51–62.e4. doi: 10.1016/j.devcel.2022.12.003