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Items: 1 to 20 of 242

1.
Host Genetic Determinants of the Microbiome Across Animals: From Caenorhabditis elegans to Cattle
Erica P. Ryu, Emily R. Davenport
Annu Rev Anim Biosci. Author manuscript; available in PMC 2024 Apr 8.
Published in final edited form as: Annu Rev Anim Biosci. 2022 Feb 15; 10: 203–226. doi: 10.1146/annurev-animal-020420-032054
PMCID:
PMC11000414
AbstractArticlePDF–1.6M
2.
Transcription factor expression landscape in Drosophila embryonic cell lines
Robert A. Drewell, Daniel Klonaros, Jacqueline M. Dresch
BMC Genomics. 2024; 25: 307. Published online 2024 Mar 23. doi: 10.1186/s12864-024-10241-1
PMCID:
PMC10960990
AbstractArticlePDF–4.0M
3.
Revisiting bicoid function: complete inactivation reveals an additional fundamental role in Drosophila egg geometry specification
Stefan Baumgartner
Hereditas. 2024; 161: 1. Published online 2024 Jan 2. doi: 10.1186/s41065-023-00305-9
PMCID:
PMC10759373
AbstractArticlePDF–3.1M
4.
Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm
Jingjing Sun, Chen Zhang, Fan Gao, Angelike Stathopoulos
Cell Rep. Author manuscript; available in PMC 2023 Dec 8.
Published in final edited form as: Cell Rep. 2023 Oct 31; 42(10): 113289. Published online 2023 Oct 19. doi: 10.1016/j.celrep.2023.113289
PMCID:
PMC10704487
AbstractArticlePDF–2.8M
5.
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
Kaelan J. Brennan, Melanie Weilert, Sabrina Krueger, Anusri Pampari, Hsiao-yun Liu, Ally W.H. Yang, Jason A. Morrison, Timothy R. Hughes, Christine A. Rushlow, Anshul Kundaje, Julia Zeitlinger
Dev Cell. Author manuscript; available in PMC 2023 Oct 23.
Published in final edited form as: Dev Cell. 2023 Oct 9; 58(19): 1898–1916.e9. Published online 2023 Aug 8. doi: 10.1016/j.devcel.2023.07.007
PMCID:
PMC10592203
AbstractArticlePDF–3.4M
6.
The evolution and mutational robustness of chromatin accessibility in Drosophila
Samuel Khodursky, Eric B. Zheng, Nicolas Svetec, Sylvia M. Durkin, Sigi Benjamin, Alice Gadau, Xia Wu, Li Zhao
Genome Biol. 2023; 24: 232. Published online 2023 Oct 16. doi: 10.1186/s13059-023-03079-5
PMCID:
PMC10578003
AbstractArticlePDF–5.2M
7.
Chromatin and gene expression changes during female Drosophila germline stem cell development illuminate the biology of highly potent stem cells
Liang-Yu Pang, Steven DeLuca, Haolong Zhu, John M Urban, Allan C Spradling
eLife. 2023; 12: RP90509. Published online 2023 Oct 13. doi: 10.7554/eLife.90509
PMCID:
PMC10575629
AbstractArticlePDF–6.3M
8.
Exposure to high-sugar diet induces transgenerational changes in sweet sensitivity and feeding behavior via H3K27me3 reprogramming
Jie Yang, Ruijun Tang, Shiye Chen, Yinan Chen, Kai Yuan, Rui Huang, Liming Wang
eLife. 2023; 12: e85365. Published online 2023 Sep 12. doi: 10.7554/eLife.85365
PMCID:
PMC10558205
AbstractArticlePDF–2.4M
9.
In-silico identification and comparison of transcription factor binding sites cluster in anterior-posterior patterning genes in Drosophila melanogaster and Tribolium castaneum
Anshika Moudgil, Ranbir Chander Sobti, Tejinder Kaur
PLoS One. 2023; 18(8): e0290035. Published online 2023 Aug 17. doi: 10.1371/journal.pone.0290035
PMCID:
PMC10434971
AbstractArticlePDF–2.1M
10.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
11.
A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi
William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker
Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004
PMCID:
PMC10078917
AbstractArticlePDF–18M
12.
A timer gene network is spatially regulated by the terminal system in the Drosophila embryo
Erik Clark, Margherita Battistara, Matthew A Benton
eLife. 2022; 11: e78902. Published online 2022 Dec 16. doi: 10.7554/eLife.78902
PMCID:
PMC10065802
AbstractArticlePDF–13M
13.
Unraveling the Role of Antimicrobial Peptides in Insects
Sylwia Stączek, Małgorzata Cytryńska, Agnieszka Zdybicka-Barabas
Int J Mol Sci. 2023 Mar; 24(6): 5753. Published online 2023 Mar 17. doi: 10.3390/ijms24065753
PMCID:
PMC10059942
AbstractArticlePDF–1.8M
14.
Nutrigenomic regulation of sensory plasticity
Hayeon Sung, Anoumid Vaziri, Daniel Wilinski, Riley KR Woerner, Peter L Freddolino, Monica Dus
eLife. 2023; 12: e83979. Published online 2023 Mar 23. doi: 10.7554/eLife.83979
PMCID:
PMC10036121
AbstractArticlePDF–3.0M
15.
Updates on ion and water transport by the Malpighian tubule
Julian A T Dow, Sue Ann Krause, Pawel Herzyk
Curr Opin Insect Sci. 2021 Oct; 47: 31–37. doi: 10.1016/j.cois.2021.02.018
PMCID:
PMC9586879
AbstractArticle
16.
Dynamic Regulation of NF-κB Response in Innate Immunity: The Case of the IMD Pathway in Drosophila
Alexandre Cammarata-Mouchtouris, Adrian Acker, Akira Goto, Di Chen, Nicolas Matt, Vincent Leclerc
Biomedicines. 2022 Sep; 10(9): 2304. Published online 2022 Sep 16. doi: 10.3390/biomedicines10092304
PMCID:
PMC9496462
AbstractArticlePDF–1.2M
17.
The Role of Microbiota in Drosophila melanogaster Aging
Aranzazu Arias-Rojas, Igor Iatsenko
Front Aging. 2022; 3: 909509. Published online 2022 May 19. doi: 10.3389/fragi.2022.909509
PMCID:
PMC9261426
AbstractArticlePDF–1.0M
18.
Mechanistic Gene Networks Inferred from Single-Cell Data with an Outlier-Insensitive Method
Jung Min Han, Sudheesha Perera, Zeba Wunderlich, Vipul Periwal
Math Biosci. Author manuscript; available in PMC 2022 Dec 1.
Published in final edited form as: Math Biosci. 2021 Dec; 342: 108722. Published online 2021 Oct 21. doi: 10.1016/j.mbs.2021.108722
PMCID:
PMC8722367
AbstractArticlePDF–3.8M
19.
Patterning with clocks and genetic cascades: Segmentation and regionalization of vertebrate versus insect body plans
Margarete Diaz-Cuadros, Olivier Pourquié, Ezzat El-Sherif
PLoS Genet. 2021 Oct; 17(10): e1009812. Published online 2021 Oct 14. doi: 10.1371/journal.pgen.1009812
PMCID:
PMC8516289
AbstractArticlePDF–1.4M
20.
Polycomb-group recruitment to a Drosophila target gene is the default state that is inhibited by a transcriptional activator
Elnaz Ghotbi, Piao Ye, Taylor Ervin, Anni Kum, Judith Benes, Richard S. Jones
Sci Adv. 2021 Jul; 7(29): eabg1556. Published online 2021 Jul 16. doi: 10.1126/sciadv.abg1556
PMCID:
PMC8284896
AbstractArticlePDF–1.3M

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