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Items: 1 to 20 of 32

1.
Endolysosomal trafficking controls yolk granule biogenesis in vitellogenic Drosophila oocytes
Yue Yu, Dongsheng Chen, Stephen M. Farmer, Shiyu Xu, Beatriz Rios, Amanda Solbach, Xin Ye, Lili Ye, Sheng Zhang
PLoS Genet. 2024 Feb; 20(2): e1011152. Published online 2024 Feb 5. doi: 10.1371/journal.pgen.1011152
PMCID:
PMC10898735
AbstractArticlePDF–9.6M
2.
Membrane-Actin Interactions in Morphogenesis:Lessons Learned from Drosophila Cellularization
Anna Marie Sokac, Natalie Biel, Stefano De Renzis
Semin Cell Dev Biol. Author manuscript; available in PMC 2024 Jan 15.
Published in final edited form as: Semin Cell Dev Biol. 2023 Jan 15; 133: 107–122. Published online 2022 Apr 5. doi: 10.1016/j.semcdb.2022.03.028
PMCID:
PMC9532467
AbstractArticlePDF–1.2M
3.
Vav independently regulates synaptic growth and plasticity through distinct actin-based processes
Hyun Gwan Park, Yeongjin David Kim, Eunsang Cho, Ting-Yi Lu, Chi-Kuang Yao, Jihye Lee, Seungbok Lee
J Cell Biol. 2022 Oct 3; 221(10): e202203048. Published online 2022 Aug 17. doi: 10.1083/jcb.202203048
PMCID:
PMC9388202
AbstractArticlePDF–8.6M
4.
The Organization of Pericentromeric Heterochromatin in Polytene Chromosome 3 of the Drosophilamelanogaster Line with the Rif11; SuURES Su(var)3-906 Mutations Suppressing Underreplication
Tatyana Zykova, Mariya Maltseva, Fedor Goncharov, Lidia Boldyreva, Galina Pokholkova, Tatyana Kolesnikova, Igor Zhimulev
Cells. 2021 Nov; 10(11): 2809. Published online 2021 Oct 20. doi: 10.3390/cells10112809
PMCID:
PMC8616060
AbstractArticlePDF–5.8M
5.
Predicting host dependency factors of pathogens in Drosophila melanogaster using machine learning
Olufemi Aromolaran, Thomas Beder, Eunice Adedeji, Yvonne Ajamma, Jelili Oyelade, Ezekiel Adebiyi, Rainer Koenig
Comput Struct Biotechnol J. 2021; 19: 4581–4592. Published online 2021 Aug 9. doi: 10.1016/j.csbj.2021.08.010
PMCID:
PMC8385402
AbstractArticlePDF–2.2M
6.
Comprehensive Identification and Alternative Splicing of Microexons in Drosophila
Ting-Lin Pang, Zhan Ding, Shao-Bo Liang, Liang Li, Bei Zhang, Yu Zhang, Yu-Jie Fan, Yong-Zhen Xu
Front Genet. 2021; 12: 642602. Published online 2021 Mar 30. doi: 10.3389/fgene.2021.642602
PMCID:
PMC8042270
AbstractArticlePDF–3.6M
7.
A genome engineering resource to uncover principles of cellular organization and tissue architecture by lipid signaling
Deepti Trivedi, Vinitha CM, Karishma Bisht, Vishnu Janardan, Awadhesh Pandit, Bishal Basak, Shwetha H, Navyashree Ramesh, Padinjat Raghu
eLife. 2020; 9: e55793. Published online 2020 Dec 15. doi: 10.7554/eLife.55793
PMCID:
PMC7771963
AbstractArticlePDF–1.6M
8.
BMP-dependent synaptic development requires Abi-Abl-Rac signaling of BMP receptor macropinocytosis
Najin Kim, Sungdae Kim, Minyeop Nahm, Danielle Kopke, Joohyung Kim, Eunsang Cho, Min-Jung Lee, Mihye Lee, Seung Hyun Kim, Kendal Broadie, Seungbok Lee
Nat Commun. 2019; 10: 684. Published online 2019 Feb 8. doi: 10.1038/s41467-019-08533-2
PMCID:
PMC6368546
AbstractArticlePDF–6.8M
9.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
10.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
11.
The GAGA factor regulatory network: Identification of GAGA factor associated proteins
Dmitry Lomaev, Anna Mikhailova, Maksim Erokhin, Alexander V. Shaposhnikov, James J. Moresco, Tatiana Blokhina, Daniel Wolle, Tsutomu Aoki, Vladimir Ryabykh, John R. Yates, III, Yulii V. Shidlovskii, Pavel Georgiev, Paul Schedl, Darya Chetverina
PLoS One. 2017; 12(3): e0173602. Published online 2017 Mar 15. doi: 10.1371/journal.pone.0173602
PMCID:
PMC5351981
AbstractArticlePDF–2.6M
12.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
13.
NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data
Yuting Ye, Jingyi Jessica Li
BMC Genomics. 2016; 17(Suppl 1): 11. Published online 2016 Jan 11. doi: 10.1186/s12864-015-2304-8
Correction in:
BMC Genomics. 2016; 17: 296.
PMCID:
PMC4895266
AbstractArticlePDF–2.1M
14.
Modulation of Heterochromatin by Male Specific Lethal Proteins and roX RNA in Drosophila melanogaster Males
S. Kiran Koya, Victoria H. Meller
PLoS One. 2015; 10(10): e0140259. Published online 2015 Oct 15. doi: 10.1371/journal.pone.0140259
PMCID:
PMC4607463
AbstractArticlePDF–720K
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
Regulators of Autophagosome Formation in Drosophila Muscles
Jonathan Zirin, Joppe Nieuwenhuis, Anastasia Samsonova, Rong Tao, Norbert Perrimon
PLoS Genet. 2015 Feb; 11(2): e1005006. Published online 2015 Feb 18. doi: 10.1371/journal.pgen.1005006
PMCID:
PMC4334200
AbstractArticlePDF–2.4M
19.
Toward a Comprehensive Map of the Effectors of Rab GTPases
Alison K. Gillingham, Rita Sinka, Isabel L. Torres, Kathryn S. Lilley, Sean Munro
Dev Cell. 2014 Nov 10; 31(3): 358–373. doi: 10.1016/j.devcel.2014.10.007
PMCID:
PMC4232348
AbstractArticle
20.
Tubular endocytosis drives remodelling of the apical surface during epithelial morphogenesis in Drosophila
Piotr Fabrowski, Aleksandar S. Necakov, Simone Mumbauer, Eva Loeser, Alessandra Reversi, Sebastian Streichan, John A. G. Briggs, Stefano De Renzis
Nat Commun. 2013 Aug 7; 4: 2244. Published online 2013 Aug 7. doi: 10.1038/ncomms3244
PMCID:
PMC3753550
AbstractArticlePDF–6.8M

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