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Items: 1 to 20 of 79

1.
Persistent Acetylation of Histone H3 Lysine 56 Compromises the Activity of DNA Replication Origins
Roch Tremblay, Yosra Mehrjoo, Oumaima Ahmed, Antoine Simoneau, Mary E. McQuaid, El Bachir Affar, Corey Nislow, Guri Giaever, Hugo Wurtele
Mol Cell Biol. 2023; 43(11): 566–595. Published online 2023 Nov 17. doi: 10.1080/10985549.2023.2259739
PMCID:
PMC10791153
AbstractArticlePDF–4.0M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
4.
The Histone Deacetylases Hst1 and Rpd3 Integrate De Novo NAD+ Metabolism with Phosphate Sensing in Saccharomyces cerevisiae
Benjamin Groth, Yi-Ching Lee, Chi-Chun Huang, Matilda McDaniel, Katie Huang, Lan-Hsuan Lee, Su-Ju Lin
Int J Mol Sci. 2023 May; 24(9): 8047. Published online 2023 Apr 28. doi: 10.3390/ijms24098047
PMCID:
PMC10179157
AbstractArticlePDF–2.0M
5.
The histone deacetylases Rpd3 and Hst1 antagonistically regulate de novo NAD+ metabolism in the budding yeast Saccharomyces cerevisiae
Benjamin Groth, Chi-Chun Huang, Su-Ju Lin
J Biol Chem. 2022 Oct; 298(10): 102410. Published online 2022 Aug 22. doi: 10.1016/j.jbc.2022.102410
PMCID:
PMC9486569
AbstractArticlePDF–2.5M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
Structural and functional analysis of the SET3 histone deacetylase complex
Alexis A. Reyes, Susan Fishbain, Yuan He
Acta Crystallogr F Struct Biol Commun. 2022 Mar 1; 78(Pt 3): 113–118. Published online 2022 Feb 23. doi: 10.1107/S2053230X22000553
PMCID:
PMC8900736
AbstractArticlePDF–906K
8.
Systems-level effects of allosteric perturbations to a model molecular switch
Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme
Nature. Author manuscript; available in PMC 2022 May 1.
Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6
PMCID:
PMC8571063
AbstractArticlePDF–2.7M
9.
Genetic screen for suppressors of increased silencing in rpd3 mutants in Saccharomyces cerevisiae identifies a potential role for H3K4 methylation
Richard A Kleinschmidt, Laurie M Lyon, Samantha L Smith, Jonah Rittenberry, K Maeve Lawless, Anabelle A Acosta, David Donze
G3 (Bethesda) 2021 Nov; 11(11): jkab309. Published online 2021 Sep 17. doi: 10.1093/g3journal/jkab309
PMCID:
PMC8527511
AbstractArticlePDF–808K
10.
Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes
Yeonji Chang, Gyubum Lim, Won-Ki Huh
J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060
PMCID:
PMC7879482
AbstractArticlePDF–5.9M
11.
Gene Loss Predictably Drives Evolutionary Adaptation
Jana Helsen, Karin Voordeckers, Laura Vanderwaeren, Toon Santermans, Maria Tsontaki, Kevin J Verstrepen, Rob Jelier
Mol Biol Evol. 2020 Oct; 37(10): 2989–3002. Published online 2020 Jul 13. doi: 10.1093/molbev/msaa172
PMCID:
PMC7530610
AbstractArticlePDF–1.8M
12.
Depletion of Limiting rDNA Structural Complexes Triggers Chromosomal Instability and Replicative Aging of Saccharomyces cerevisiae
Ryan D. Fine, Nazif Maqani, Mingguang Li, Elizabeth Franck, Jeffrey S. Smith
Genetics. 2019 May; 212(1): 75–91. Published online 2019 Mar 6. doi: 10.1534/genetics.119.302047
PMCID:
PMC6499517
AbstractArticlePDF–2.1M
13.
A synthetic non-histone substrate to study substrate targeting by the Gcn5 HAT and sirtuin HDACs
Anthony Rössl, Alix Denoncourt, Mong-Shang Lin, Michael Downey
J Biol Chem. 2019 Apr 19; 294(16): 6227–6239. Published online 2019 Feb 25. doi: 10.1074/jbc.RA118.006051
PMCID:
PMC6484106
AbstractArticlePDF–1.7M
14.
The copper-sensing transcription factor Mac1, the histone deacetylase Hst1, and nicotinic acid regulate de novo NAD+ biosynthesis in budding yeast
Christol James Theoga Raj, Trevor Croft, Padmaja Venkatakrishnan, Benjamin Groth, Gagandeep Dhugga, Timothy Cater, Su-Ju Lin
J Biol Chem. 2019 Apr 5; 294(14): 5562–5575. Published online 2019 Feb 13. doi: 10.1074/jbc.RA118.006987
PMCID:
PMC6462523
AbstractArticlePDF–2.3M
15.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
16.
The Yeast DNA Damage Checkpoint Kinase Rad53 Targets the Exoribonuclease, Xrn1
Jessica P. Lao, Katie M. Ulrich, Jeffrey R. Johnson, Billy W. Newton, Ajay A. Vashisht, James A. Wohlschlegel, Nevan J. Krogan, David P. Toczyski
G3 (Bethesda) 2018 Dec; 8(12): 3931–3944. Published online 2018 Oct 30. doi: 10.1534/g3.118.200767
PMCID:
PMC6288840
AbstractArticlePDF–2.1M
17.
An interplay between multiple sirtuins promotes completion of DNA replication in cells with short telomeres
Antoine Simoneau, Étienne Ricard, Hugo Wurtele
PLoS Genet. 2018 Apr; 14(4): e1007356. Published online 2018 Apr 16. doi: 10.1371/journal.pgen.1007356
PMCID:
PMC5919697
AbstractArticlePDF–30M
18.
A functional link between NAD+ homeostasis and N-terminal protein acetylation in Saccharomyces cerevisiae
Trevor Croft, Christol James Theoga Raj, Michelle Salemi, Brett S. Phinney, Su-Ju Lin
J Biol Chem. 2018 Feb 23; 293(8): 2927–2938. Published online 2018 Jan 9. doi: 10.1074/jbc.M117.807214
PMCID:
PMC5827443
AbstractArticlePDF–1.7M
19.
Repression of Middle Sporulation Genes in Saccharomyces cerevisiae by the Sum1-Rfm1-Hst1 Complex Is Maintained by Set1 and H3K4 Methylation
Deepika Jaiswal, Meagan Jezek, Jeremiah Quijote, Joanna Lum, Grace Choi, Rushmie Kulkarni, DoHwan Park, Erin M. Green
G3 (Bethesda) 2017 Dec; 7(12): 3971–3982. Published online 2017 Oct 24. doi: 10.1534/g3.117.300150
PMCID:
PMC5714494
AbstractArticlePDF–1.7M
20.
Exploring Quantitative Yeast Phenomics with Single Cell Analysis of DNA Damage Foci
Erin B. Styles, Karen J. Founk, Lee A. Zamparo, Tina L. Sing, Dogus Altintas, Cyril Ribeyre, Virginie Ribaud, Jacques Rougemont, David Mayhew, Michael Costanzo, Matej Usaj, Adrian J. Verster, Elizabeth N. Koch, Daniele Novarina, Marco Graf, Brian Luke, Marco Muzi-Falconi, Chad L. Myers, Robi David Mitra, David Shore, Grant W. Brown, Zhaolei Zhang, Charles Boone, Brenda J. Andrews
Cell Syst. Author manuscript; available in PMC 2017 Nov 16.
Published in final edited form as: Cell Syst. 2016 Sep 28; 3(3): 264–277.e10. Published online 2016 Sep 8. doi: 10.1016/j.cels.2016.08.008
PMCID:
PMC5689480
AbstractArticlePDF–2.9M

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