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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107988582.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102350864.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 102333685.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 77187517.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 73923458.

Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes

Jennifer N. Wells, Robert Buschauer, Timur Mackens-Kiani, Katharina Best, Hanna Kratzat, Otto Berninghausen, Thomas Becker, Wendy Gilbert, Jingdong Cheng, Roland Beckmann

PLoS Biol. 2020 Jul; 18(7): e3000780. Published online 2020 Jul 20. doi: 10.1371/journal.pbio.3000780

PMCID:: PMC7392345

Abstract Article PDF–4.2M

Select item 70635719.

Pre-emptive Quality Control of a Misfolded Membrane Protein by Ribosome-Driven Effects

Ramya Lakshminarayan, Ben P. Phillips, Imogen L. Binnian, Natalia Gomez-Navarro, Norberto Escudero-Urquijo, Alan J. Warren, Elizabeth A. Miller

Curr Biol. 2020 Mar 9; 30(5): 854–864.e5. doi: 10.1016/j.cub.2019.12.060

PMCID:: PMC7063571

Abstract Article

Select item 687876210.

Structural basis of highly conserved ribosome recycling in eukaryotes and archaea

Thomas Becker, Sibylle Franckenberg, Stephan Wickles, Christopher J. Shoemaker, Andreas M. Anger, Jean-Paul Armache, Heidemarie Sieber, Charlotte Ungewickell, Otto Berninghausen, Ingo Daberkow, Annette Karcher, Michael Thomm, Karl-Peter Hopfner, Rachel Green, Roland Beckmann

Nature. Author manuscript; available in PMC 2019 Nov 26.

Published in final edited form as: Nature. 2012 Feb 22; 482(7386): 501–506. Published online 2012 Feb 22. doi: 10.1038/nature10829

PMCID:: PMC6878762

Abstract Article PDF–1.8M

Select item 675059311.

Inverted translational control of eukaryotic gene expression by ribosome collisions

Heungwon Park, Arvind R. Subramaniam

PLoS Biol. 2019 Sep; 17(9): e3000396. Published online 2019 Sep 18. doi: 10.1371/journal.pbio.3000396

PMCID:: PMC6750593

Abstract Article PDF–2.3M

Select item 659875712.

The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay

Karole N D'Orazio, Colin Chih-Chien Wu, Niladri Sinha, Raphael Loll-Krippleber, Grant W Brown, Rachel Green

eLife. 2019; 8: e49117. Published online 2019 Jun 20. doi: 10.7554/eLife.49117

PMCID:: PMC6598757

Abstract Article PDF–5.7M

Select item 628361213.

Interactions between the mRNA and Rps3/uS3 at the entry tunnel of the ribosomal small subunit are important for no-go decay

Carrie L. Simms, Kyusik Q. Kim, Liewei L. Yan, Jessica Qiu, Hani S. Zaher

PLoS Genet. 2018 Nov; 14(11): e1007818. Published online 2018 Nov 26. doi: 10.1371/journal.pgen.1007818

PMCID:: PMC6283612

Abstract Article PDF–3.1M

Select item 621571314.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 614559215.

Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast

Houman Moteshareie, Maryam Hajikarimlou, Alex Mulet Indrayanti, Daniel Burnside, Ana Paula Dias, Clara Lettl, Duale Ahmed, Katayoun Omidi, Tom Kazmirchuk, Nathalie Puchacz, Narges Zare, Sarah Takallou, Thet Naing, Raúl Bonne Hernández, William G. Willmore, Mohan Babu, Bruce McKay, Bahram Samanfar, Martin Holcik, Ashkan Golshani

PLoS One. 2018; 13(9): e0198704. Published online 2018 Sep 19. doi: 10.1371/journal.pone.0198704

PMCID:: PMC6145592

Abstract Article PDF–8.0M

Select item 585996916.

A meiotic XPF–ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation

Arnaud De Muyt, Alexandra Pyatnitskaya, Jessica Andréani, Lepakshi Ranjha, Claire Ramus, Raphaëlle Laureau, Ambra Fernandez-Vega, Daniel Holoch, Elodie Girard, Jérome Govin, Raphaël Margueron, Yohann Couté, Petr Cejka, Raphaël Guérois, Valérie Borde

Genes Dev. 2018 Feb 1; 32(3-4): 283–296. doi: 10.1101/gad.308510.117

PMCID:: PMC5859969

Abstract Article PDF–8.0M

Select item 583275317.

Loss of mRNA surveillance pathways results in widespread protein aggregation

Nur Hidayah Jamar, Paraskevi Kritsiligkou, Chris M. Grant

Sci Rep. 2018; 8: 3894. Published online 2018 Mar 1. doi: 10.1038/s41598-018-22183-2

Correction in:: Sci Rep. 2021; 11: 16722.

PMCID:: PMC5832753

Abstract Article PDF–2.2M

Select item 576535918.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 569178619.

The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A

Bahram Samanfar, Kristina Shostak, Houman Moteshareie, Maryam Hajikarimlou, Sarah Shaikho, Katayoun Omidi, Mohsen Hooshyar, Daniel Burnside, Imelda Galván Márquez, Tom Kazmirchuk, Thet Naing, Paula Ludovico, Anna York-Lyon, Kama Szereszewski, Cindy Leung, Jennifer Yixin Jin, Rami Megarbane, Myron L. Smith, Mohan Babu, Martin Holcik, Ashkan Golshani

PeerJ. 2017; 5: e4037. Published online 2017 Nov 14. doi: 10.7717/peerj.4037

PMCID:: PMC5691786

Abstract Article PDF–1.0M

Select item 568901320.

ASC1 and RPS3: new actors in 18S nonfunctional rRNA decay

Kelly A. Limoncelli, Christopher N. Merrikh, Melissa J. Moore

RNA. 2017 Dec; 23(12): 1946–1960. doi: 10.1261/rna.061671.117

Correction in:: RNA. 2018 Apr; 24(4): 620.

PMCID:: PMC5689013

Abstract Article PDF–20M

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