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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102977003.

The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions

Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman

Mol Cell. Author manuscript; available in PMC 2024 Jun 15.

Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021

PMCID:: PMC10297700

Abstract Article PDF–2.0M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 101630885.

Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1

Julia Lettow, Felix Kliewe, Rasha Aref, Hans-Joachim Schüller

Curr Genet. 2023; 69(2-3): 127–139. Published online 2023 Mar 1. doi: 10.1007/s00294-023-01262-6

PMCID:: PMC10163088

Abstract Article PDF–1.2M

Select item 99305286.

SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest

Ayse Koca Caydasi, Anton Khmelinskii, Zoulfia Darieva, Bahtiyar Kurtulmus, Michael Knop, Gislene Pereira

Mol Biol Cell. 2023 Feb 1; 34(2): ar11. Published online 2023 Jan 13. doi: 10.1091/mbc.E20-03-0179

PMCID:: PMC9930528

Abstract Article PDF–8.4M

Select item 96309867.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85571899.

Efficient breeding of industrial brewing yeast strains using CRISPR/Cas9-aided mating-type switching

Kristoffer Krogerus, Eugene Fletcher, Nils Rettberg, Brian Gibson, Richard Preiss

Appl Microbiol Biotechnol. 2021; 105(21-22): 8359–8376. Published online 2021 Oct 13. doi: 10.1007/s00253-021-11626-y

PMCID:: PMC8557189

Abstract Article PDF–4.6M

Select item 854891610.

Cnm1 mediates nucleus–mitochondria contact site formation in response to phospholipid levels

Michal Eisenberg-Bord, Naama Zung, Javier Collado, Layla Drwesh, Emma J. Fenech, Amir Fadel, Nili Dezorella, Yury S. Bykov, Doron Rapaport, Ruben Fernandez-Busnadiego, Maya Schuldiner

J Cell Biol. 2021 Nov 1; 220(11): e202104100. Published online 2021 Oct 25. doi: 10.1083/jcb.202104100

PMCID:: PMC8548916

Abstract Article PDF–6.5M

Select item 839628111.

Generalizable Compositional Features Influencing the Proteostatic Fates of Polar Low-Complexity Domains

Sean M. Cascarina, Joshua P. Kaplan, Mikaela R. Elder, Lindsey Brookbank, Eric D. Ross

Int J Mol Sci. 2021 Aug; 22(16): 8944. Published online 2021 Aug 19. doi: 10.3390/ijms22168944

PMCID:: PMC8396281

Abstract Article PDF–4.9M

Select item 812838812.

Proteasome Control of [URE3] Prion Propagation by Degradation of Anti-Prion Proteins Cur1 and Btn2 in Saccharomyces cerevisiae

Herman K Edskes, Emily E Stroobant, Morgan P DeWilde, Evgeny E Bezsonov, Reed B Wickner

Genetics. 2021 May; 218(1): iyab037. Published online 2021 Apr 1. doi: 10.1093/genetics/iyab037

PMCID:: PMC8128388

Abstract Article PDF–862K

Select item 807492513.

Effect of spin labelling on the aggregation kinetics of yeast prion protein Ure2

Emilie N. Liu, Giovanna Park, Junsuke Nohara, Zhefeng Guo

R Soc Open Sci. 2021 Mar; 8(3): 201747. Published online March 3, 2021. doi: 10.1098/rsos.201747

PMCID:: PMC8074925

Abstract Article PDF–1.5M

Select item 804955014.

Innate immunity to yeast prions: Btn2p and Cur1p curing of the [URE3] prion is prevented by 60S ribosomal protein deficiency or ubiquitin/proteasome system overactivity

Evgeny E Bezsonov, Herman K Edskes, Reed B Wickner

Genetics. 2021 Apr; 217(4): iyab013. Published online 2021 Feb 3. doi: 10.1093/genetics/iyab013

PMCID:: PMC8049550

Abstract Article PDF–782K

Select item 794844815.

14-3-3 Protein Bmh1 triggers short-range compaction of mitotic chromosomes by recruiting sirtuin deacetylase Hst2

Neha Jain, Petra Janning, Heinz Neumann

J Biol Chem. 2021 Jan-Jun; 296: 100078. Published online 2020 Nov 23. doi: 10.1074/jbc.AC120.014758

PMCID:: PMC7948448

Abstract Article PDF–1.3M

Select item 787948216.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 755684417.

Mutations Outside the Ure2 Amyloid-Forming Region Disrupt [URE3] Prion Propagation and Alter Interactions with Protein Quality Control Factors

Shailesh Kumar, Elliot A. Dine, Ethan Paddock, Danielle N. Steinberg, Lois E. Greene, Daniel C. Masison

Mol Cell Biol. 2020 Nov; 40(21): e00294-20. Prepublished online 2020 Aug 31. Published online 2020 Oct 13. doi: 10.1128/MCB.00294-20

PMCID:: PMC7556844

Abstract Article PDF–2.7M

Select item 709800018.

Spin Label Scanning Reveals Likely Locations of β-Strands in the Amyloid Fibrils of the Ure2 Prion Domain

Jingzhou Wang, Giovanna Park, Yoon Kyung Lee, Matthew Nguyen, Tiffany San Fung, Tiffany Yuwen Lin, Frederick Hsu, Zhefeng Guo

ACS Omega. 2020 Mar 24; 5(11): 5984–5993. Published online 2020 Mar 11. doi: 10.1021/acsomega.9b04358

PMCID:: PMC7098000

Abstract Article PDF–2.9M

Select item 670745619.

Sit4 and PP2A Dephosphorylate Nitrogen Catabolite Repression-Sensitive Gln3 When TorC1 Is Up- as Well as Downregulated

Jennifer J. Tate, Elizabeth A. Tolley, Terrance G. Cooper

Genetics. 2019 Aug; 212(4): 1205–1225. Published online 2019 Jun 18. doi: 10.1534/genetics.119.302371

PMCID:: PMC6707456

Abstract Article PDF–2.7M

Select item 666992220.

Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism

Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis

EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433