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Items: 1 to 20 of 163

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
Spatial regulation of DNA damage tolerance protein Rad5 interconnects genome stability maintenance and proteostasis networks
Carl P Lehmann, Paula González-Fernández, José Antonio Tercero
Nucleic Acids Res. 2024 Feb 9; 52(3): 1156–1172. Published online 2023 Dec 6. doi: 10.1093/nar/gkad1176
PMCID:
PMC10853803
AbstractArticlePDF–3.5M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20
Ifeoluwapo Matthew Joshua, Meng Lin, Ariestia Mardjuki, Alessandra Mazzola, Thomas Höfken
Int J Mol Sci. 2023 Nov; 24(21): 15916. Published online 2023 Nov 2. doi: 10.3390/ijms242115916
PMCID:
PMC10647699
AbstractArticlePDF–5.4M
5.
Genetic Dissection of Budding Yeast PCNA Mutations Responsible for the Regulated Recruitment of Srs2 Helicase
Li Fan, Wenqing Zhang, Josephine Rybchuk, Yu Luo, Wei Xiao
mBio. 2023 Mar-Apr; 14(2): e00315-23. Published online 2023 Mar 2. doi: 10.1128/mbio.00315-23
PMCID:
PMC10127746
AbstractArticlePDF–3.9M
6.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
7.
Mutations of Rad6 E2 ubiquitin-conjugating enzymes at alanine-126 in helix-3 affect ubiquitination activity and decrease enzyme stability
Prakash K. Shukla, Dhiraj Sinha, Andrew M. Leng, Jesse E. Bissell, Shravya Thatipamula, Rajarshi Ganguly, Kaitlin S. Radmall, Jack J. Skalicky, Dennis C. Shrieve, Mahesh B. Chandrasekharan
J Biol Chem. 2022 Nov; 298(11): 102524. Published online 2022 Sep 23. doi: 10.1016/j.jbc.2022.102524
PMCID:
PMC9630792
AbstractArticlePDF–4.0M
8.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
9.
The inner side of yeast PCNA contributes to genome stability by mediating interactions with Rad18 and the replicative DNA polymerase δ
Robert Toth, Miklos Halmai, Zsuzsanna Gyorfy, Eva Balint, Ildiko Unk
Sci Rep. 2022; 12: 5163. Published online 2022 Mar 25. doi: 10.1038/s41598-022-09208-7
PMCID:
PMC8956578
AbstractArticlePDF–4.2M
10.
The Zn-finger of Saccharomyces cerevisiae Rad18 and its adjacent region mediate interaction with Rad5
Orsolya Frittmann, Vamsi K Gali, Miklos Halmai, Robert Toth, Zsuzsanna Gyorfy, Eva Balint, Ildiko Unk
G3 (Bethesda) 2021 Apr; 11(4): jkab041. Published online 2021 Feb 11. doi: 10.1093/g3journal/jkab041
PMCID:
PMC8759821
AbstractArticlePDF–895K
11.
Yeast Nst1 is a novel component of P-bodies and is a specific suppressor of proteasome base assembly defects
Chin Leng Cheng, Michael K. Wong, Mark Hochstrasser
Mol Biol Cell. 2021 Oct 1; 32(20): ar6. doi: 10.1091/mbc.E21-04-0178
PMCID:
PMC8684758
AbstractArticlePDF–2.7M
12.
Yeast DNA polymerase η possesses two PIP-like motifs that bind PCNA and Rad6-Rad18 with different specificities
Brittany M. Ripley, Devin T. Reusch, M. Todd Washington
DNA Repair (Amst) Author manuscript; available in PMC 2021 Nov 1.
Published in final edited form as: DNA Repair (Amst). 2020 Nov; 95: 102968. Published online 2020 Sep 6. doi: 10.1016/j.dnarep.2020.102968
PMCID:
PMC8240473
AbstractArticlePDF–869K
13.
A Conserved Histone H3-H4 Interface Regulates DNA Damage Tolerance and Homologous Recombination during the Recovery from Replication Stress
Masafumi Hayashi, Kenji Keyamura, Asami Yoshida, Mariko Ariyoshi, Genki Akanuma, Takashi Hishida
Mol Cell Biol. 2021 Apr; 41(4): e00044-20. Prepublished online 2021 Feb 1. Published online 2021 Mar 24. doi: 10.1128/MCB.00044-20
PMCID:
PMC8088132
AbstractArticlePDF–2.9M
14.
Access to PCNA by Srs2 and Elg1 Controls the Choice between Alternative Repair Pathways in Saccharomyces cerevisiae
Matan Arbel, Alex Bronstein, Soumitra Sau, Batia Liefshitz, Martin Kupiec
mBio. 2020 May-Jun; 11(3): e00705-20. Published online 2020 May 5. doi: 10.1128/mBio.00705-20
PMCID:
PMC7403780
AbstractArticlePDF–2.6M
15.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
16.
Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae
Rani Yeung, Duncan J. Smith
Genetics. 2020 Apr; 214(4): 825–838. Published online 2020 Feb 18. doi: 10.1534/genetics.120.303092
PMCID:
PMC7153945
AbstractArticlePDF–1.8M
17.
Reconstitution of Translesion Synthesis Reveals a Mechanism of Eukaryotic DNA Replication Restart
Thomas A. Guilliam, Joseph T.P. Yeeles
Nat Struct Mol Biol. Author manuscript; available in PMC 2020 Dec 21.
Published in final edited form as: Nat Struct Mol Biol. 2020 May 1; 27(5): 450–460. Published online 2020 Apr 27. doi: 10.1038/s41594-020-0418-4
PMCID:
PMC7116498
AbstractArticlePDF–6.5M
18.
Robust high-throughput assays to assess discrete steps in ubiquitination and related cascades
Gabriel Fenteany, Paras Gaur, Gaurav Sharma, Lajos Pintér, Ernő Kiss, Lajos Haracska
BMC Mol Cell Biol. 2020; 21: 21. Published online 2020 Mar 30. doi: 10.1186/s12860-020-00262-5
PMCID:
PMC7106726
AbstractArticlePDF–1.7M
19.
Effects of chain length and geometry on the activation of DNA damage bypass by polyubiquitylated PCNA
Diane T Takahashi, Hans-Peter Wollscheid, Jonathan Lowther, Helle D Ulrich
Nucleic Acids Res. 2020 Apr 6; 48(6): 3042–3052. Published online 2020 Feb 3. doi: 10.1093/nar/gkaa053
Correction in:
Nucleic Acids Res. 2022 Jul 8; 50(12): 7197.
PMCID:
PMC7102961
AbstractArticlePDF–1.0M
20.
Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability
Eric E Bryant, Ivana Šunjevarić, Luke Berchowitz, Rodney Rothstein, Robert J D Reid
Nucleic Acids Res. 2019 Sep 26; 47(17): 9144–9159. Published online 2019 Jul 27. doi: 10.1093/nar/gkz631
PMCID:
PMC6753471
AbstractArticlePDF–6.0M

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