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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 105166422.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 104643453.

Calcineurin stimulation by Cnb1p overproduction mitigates protein aggregation and α-synuclein toxicity in a yeast model of synucleinopathy

Srishti Chawla, Doryaneh Ahmadpour, Kara L. Schneider, Navinder Kumar, Arthur Fischbach, Mikael Molin, Thomas Nystrom

Cell Commun Signal. 2023; 21: 220. Published online 2023 Aug 24. doi: 10.1186/s12964-023-01242-w

PMCID:: PMC10464345

Abstract Article PDF–2.1M

Select item 102350864.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 92860235.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85430227.

Characterization of nuclear pore complex targeting domains in Pom152 in Saccharomyces cerevisiae

Jacqueline T. Brown, Alexandra J. Haraczy, Christopher M. Wilhelm, Kenneth D. Belanger

Biol Open. 2021 Oct 15; 10(10): bio057661. Published online 2021 Oct 20. doi: 10.1242/bio.057661

PMCID:: PMC8543022

Abstract Article PDF–2.4M

Select item 84212048.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 77901849.

Heterozygous mutations cause genetic instability in a yeast model of cancer evolution

Miguel C. Coelho, Ricardo M. Pinto, Andrew W. Murray

Nature. Author manuscript; available in PMC 2021 Jan 7.

Published in final edited form as: Nature. 2019 Feb; 566(7743): 275–278. Published online 2019 Jan 30. doi: 10.1038/s41586-019-0887-y

PMCID:: PMC7790184

Abstract Article PDF–3.5M

Select item 764843210.

Optogenetic Control Reveals Differential Promoter Interpretation of Transcription Factor Nuclear Translocation Dynamics

Susan Y. Chen, Lindsey C. Osimiri, Michael Chevalier, Lukasz J. Bugaj, Taylor H. Nguyen, R.A. Greenstein, Andrew H. Ng, Jacob Stewart-Ornstein, Lauren T. Neves, Hana El-Samad

Cell Syst. Author manuscript; available in PMC 2020 Nov 7.

Published in final edited form as: Cell Syst. 2020 Oct 21; 11(4): 336–353.e24. Published online 2020 Sep 7. doi: 10.1016/j.cels.2020.08.009

PMCID:: PMC7648432

Abstract Article PDF–2.3M

Select item 756021611.

AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering

Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann

EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117

PMCID:: PMC7560216

Abstract Article PDF–3.6M

Select item 734953812.

Extreme Low Cytosolic pH Is a Signal for Cell Survival in Acid Stressed Yeast

Rodrigo Mendonça Lucena, Laura Dolz-Edo, Stanley Brul, Marcos Antonio de Morais, Jr., Gertien Smits

Genes (Basel) 2020 Jun; 11(6): 656. Published online 2020 Jun 16. doi: 10.3390/genes11060656

PMCID:: PMC7349538

Abstract Article PDF–3.8M

Select item 727317713.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 720930914.

The coordinate actions of calcineurin and Hog1 mediate the stress response through multiple nodes of the cell cycle network

Cassandra M. Leech, Mackenzie J. Flynn, Heather E. Arsenault, Jianhong Ou, Haibo Liu, Lihua Julie Zhu, Jennifer A. Benanti

PLoS Genet. 2020 Apr; 16(4): e1008600. Published online 2020 Apr 28. doi: 10.1371/journal.pgen.1008600

PMCID:: PMC7209309

Abstract Article PDF–3.8M

Select item 638597115.

A Noisy Analog-to-Digital Converter Connects Cytosolic Calcium Bursts to Transcription Factor Nuclear Localization Pulses in Yeast

Ian S. Hsu, Bob Strome, Sergey Plotnikov, Alan M. Moses

G3 (Bethesda) 2019 Feb; 9(2): 561–570. Published online 2018 Dec 20. doi: 10.1534/g3.118.200841

PMCID:: PMC6385971

Abstract Article PDF–1.5M

Select item 636115116.

Yeast-model-based study identified myosin- and calcium-dependent calmodulin signalling as a potential target for drug intervention in chorea-acanthocytosis

Piotr Soczewka, Damian Kolakowski, Iwona Smaczynska-de Rooij, Weronika Rzepnikowska, Kathryn R. Ayscough, Joanna Kaminska, Teresa Zoladek

Dis Model Mech. 2019 Jan 1; 12(1): dmm036830. Published online 2019 Jan 28. doi: 10.1242/dmm.036830

PMCID:: PMC6361151

Abstract Article

Select item 634170217.

The protein kinase Cmk2 negatively regulates the calcium/calcineurin signalling pathway and expression of calcium pump genes PMR1 and PMC1 in budding yeast

Huihui Xu, Tianshu Fang, Hongbo Yan, Linghuo Jiang

Cell Commun Signal. 2019; 17: 7. Published online 2019 Jan 21. doi: 10.1186/s12964-019-0320-z

PMCID:: PMC6341702

Abstract Article PDF–1.3M

Select item 629136618.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 594018019.

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch

PLoS Comput Biol. 2018 May; 13(5): e1006088. Published online 2018 May 8. doi: 10.1371/journal.pcbi.1006088

PMCID:: PMC5940180

Abstract Article PDF–3.0M

Select item 592252820.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319