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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105841303.

Effects of HSP70 chaperones Ssa1 and Ssa2 on Ste5 scaffold and the mating mitogen-activated protein kinase (MAPK) pathway in Saccharomyces cerevisiae

Francis W. Farley, Ryan R. McCully, Paul B. Maslo, Lu Yu, Mark A. Sheff, Homayoun Sadeghi, Elaine A. Elion

PLoS One. 2023; 18(10): e0289339. Published online 2023 Oct 18. doi: 10.1371/journal.pone.0289339

PMCID:: PMC10584130

Abstract Article PDF–6.7M

Select item 105166424.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 98363485.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 92860236.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86323368.

Snx4-assisted vacuolar targeting of transcription factors defines a new autophagy pathway for controlling ATG expression

Sara E. Hanley, Stephen D. Willis, Katrina F. Cooper

Autophagy. 2021; 17(11): 3547–3565. Published online 2021 Mar 8. doi: 10.1080/15548627.2021.1877934

PMCID:: PMC8632336

Abstract Article PDF–5.1M

Select item 81938389.

A predictive model of gene expression reveals the role of regulatory motifs in the mating response of yeast

Amy E. Pomeroy, Matthew I. Pena, John R. Houser, Gauri Dixit, Henrik G. Dohlman, Timothy C. Elston, Beverly Errede

Sci Signal. Author manuscript; available in PMC 2021 Jun 11.

Published in final edited form as: Sci Signal. 2021 Feb 16; 14(670): eabb5235. Published online 2021 Feb 16. doi: 10.1126/scisignal.abb5235

PMCID:: PMC8193838

Abstract Article PDF–2.2M

Select item 708593210.

Transfer of the Septin Ring to Cytokinetic Remnants in ER stress Directs Age-Sensitive Cell Cycle Re-entry

Jesse T. Chao, Francisco Piña, Masayuki Onishi, Yifat Cohen, Ya-Shiuan Lai, Maya Schuldiner, Maho Niwa

Dev Cell. Author manuscript; available in PMC 2020 Oct 21.

Published in final edited form as: Dev Cell. 2019 Oct 21; 51(2): 173–191.e5. Published online 2019 Sep 26. doi: 10.1016/j.devcel.2019.08.017

PMCID:: PMC7085932

Abstract Article PDF–2.5M

Select item 671944811.

Mechanical stress impairs pheromone signaling via Pkc1-mediated regulation of the MAPK scaffold Ste5

Frank van Drogen, Ranjan Mishra, Fabian Rudolf, Michal J. Walczak, Sung Sik Lee, Wolfgang Reiter, Björn Hegemann, Serge Pelet, Ilse Dohnal, Andres Binolfi, Zinaida Yudina, Philipp Selenko, Gerhard Wider, Gustav Ammerer, Matthias Peter

J Cell Biol. 2019 Sep 2; 218(9): 3117–3133. Published online 2019 Jul 17. doi: 10.1083/jcb.201808161

PMCID:: PMC6719448

Abstract Article PDF–2.7M

Select item 658990712.

MAPK modulation of yeast pheromone signaling output and the role of phosphorylation sites in the scaffold protein Ste5

Matthew J. Winters, Peter M. Pryciak

Mol Biol Cell. 2019 Apr 1; 30(8): 1037–1049. doi: 10.1091/mbc.E18-12-0793

PMCID:: PMC6589907

Abstract Article PDF–3.9M

Select item 601052113.

An Antimicrobial Peptide Induces FIG1-Dependent Cell Death During Cell Cycle Arrest in Yeast

Vladimir J. Arellano, Paula Martinell García, Jonathan G. Rodríguez Plaza, Maria T. Lara Ortiz, Gabriele Schreiber, Rudolf Volkmer, Edda Klipp, Gabriel Del Rio

Front Microbiol. 2018; 9: 1240. Published online 2018 Jun 14. doi: 10.3389/fmicb.2018.01240

PMCID:: PMC6010521

Abstract Article PDF–4.7M

Select item 600458114.

Analysis of the thresholds for transcriptional activation by the yeast MAP kinases Fus3 and Kss1

Matthew J. Winters, Peter M. Pryciak

Mol Biol Cell. 2018 Mar 1; 29(5): 669–682. doi: 10.1091/mbc.E17-10-0578

PMCID:: PMC6004581

Abstract Article PDF–2.5M

Select item 598777915.

Negative Feedback Phosphorylation of G? Subunit Ste18 and the Ste5 Scaffold Synergistically Regulates MAPK Activation in Yeast

Shilpa Choudhury, Parastoo Baradaran-Mashinchi, Matthew P. Torres

Cell Rep. Author manuscript; available in PMC 2018 Jun 5.

Published in final edited form as: Cell Rep. 2018 May 1; 23(5): 1504–1515. doi: 10.1016/j.celrep.2018.03.135

PMCID:: PMC5987779

Abstract Article PDF–1.7M

Select item 585820016.

CDK and MAPK synergistically regulate signaling dynamics via a shared multi-site phosphorylation region on the scaffold protein Ste5

María Victoria Repetto, Matthew J. Winters, Alan Bush, Wolfgang Reiter, David Maria Hollenstein, Gustav Ammerer, Peter M. Pryciak, Alejandro Colman-Lerner

Mol Cell. Author manuscript; available in PMC 2019 Mar 15.

Published in final edited form as: Mol Cell. 2018 Mar 15; 69(6): 938–952.e6. doi: 10.1016/j.molcel.2018.02.018

PMCID:: PMC5858200

Abstract Article PDF–3.2M

Select item 576535917.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 547375518.

Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28

Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink

G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317

Correction in:: G3 (Bethesda). 2019 Aug; 9(8): 2787.

PMCID:: PMC5473755

Abstract Article PDF–2.7M

Select item 538928819.

Comprehensive and quantitative mapping of RNA–protein interactions across a transcribed eukaryotic genome

Richard She, Anupam K. Chakravarty, Curtis J. Layton, Lauren M. Chircus, Johan O. L. Andreasson, Nandita Damaraju, Peter L. McMahon, Jason D. Buenrostro, Daniel F. Jarosz, William J. Greenleaf

Proc Natl Acad Sci U S A. 2017 Apr 4; 114(14): 3619–3624. Published online 2017 Mar 21. doi: 10.1073/pnas.1618370114