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Items: 1 to 20 of 32

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
Tumor–host interactions through the lens of Drosophila
David Bilder, Katy Ong, Tsai-Ching Hsi, Kavya Adiga, Jung Kim
Nat Rev Cancer. Author manuscript; available in PMC 2022 May 1.
Published in final edited form as: Nat Rev Cancer. 2021 Nov; 21(11): 687–700. Published online 2021 Aug 13. doi: 10.1038/s41568-021-00387-5
PMCID:
PMC8669834
AbstractArticlePDF–385K
3.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
4.
VCP maintains nuclear size by regulating the DNA damage-associated MDC1–p53–autophagy axis in Drosophila
Ya-Chu Chang, Yu-Xiang Peng, Bo-Hua Yu, Henry C. Chang, Pei-Shin Liang, Ting-Yi Huang, Chao-Jie Shih, Li-An Chu, Tzu-Kang Sang
Nat Commun. 2021; 12: 4258. Published online 2021 Jul 12. doi: 10.1038/s41467-021-24556-0
PMCID:
PMC8275807
AbstractArticlePDF–5.6M
5.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
6.
HITS-CLIP reveals sex-differential RNA binding and alterative splicing regulation of SRm160 in Drosophila
Chen Qiu, Yu Zhang, Yu-Jie Fan, Ting-Lin Pang, Yan Su, Shuai Zhan, Yong-Zhen Xu
J Mol Cell Biol. 2019 Feb; 11(2): 170–181. Published online 2018 May 10. doi: 10.1093/jmcb/mjy029
PMCID:
PMC6734145
AbstractArticlePDF–1.4M
7.
The Biology of SUMO-Targeted Ubiquitin Ligases in Drosophila Development, Immunity, and Cancer
Mona Abed, Eliya Bitman-Lotan, Amir Orian
J Dev Biol. 2018 Mar; 6(1): 2. Published online 2018 Jan 1. doi: 10.3390/jdb6010002
PMCID:
PMC5875560
AbstractArticlePDF–1.4M
8.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
9.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
10.
A screen for E3 ubiquitination ligases that genetically interact with the adaptor protein Cindr during Drosophila eye patterning
Kwami F. Ketosugbo, Henry L. Bushnell, Ruth I. Johnson
PLoS One. 2017; 12(11): e0187571. Published online 2017 Nov 8. doi: 10.1371/journal.pone.0187571
PMCID:
PMC5678704
AbstractArticlePDF–29M
11.
And yet, it moves: nuclear and chromatin dynamics of a heterochromatic double-strand break
P. Christopher Caridi, Laetitia Delabaere, Grzegorz Zapotoczny, Irene Chiolo
Philos Trans R Soc Lond B Biol Sci. 2017 Oct 5; 372(1731): 20160291. Published online 2017 Aug 28. doi: 10.1098/rstb.2016.0291
PMCID:
PMC5577469
AbstractArticlePDF–913K
12.
Nuclear Dynamics of Heterochromatin Repair
Nuno Amaral, Taehyun Ryu, Xiao Li, Irene Chiolo
Trends Genet. Author manuscript; available in PMC 2018 Feb 1.
Published in final edited form as: Trends Genet. 2017 Feb; 33(2): 86–100. Published online 2017 Jan 16. doi: 10.1016/j.tig.2016.12.004
PMCID:
PMC5285325
AbstractArticlePDF–854K
13.
Heterochromatic breaks move to the nuclear periphery to continue recombinational repair
Taehyun Ryu, Brett Spatola, Laetitia Delabaere, Katherine Bowlin, Hannah Hopp, Ryan Kunitake, Gary H. Karpen, Irene Chiolo
Nat Cell Biol. Author manuscript; available in PMC 2016 May 1.
Published in final edited form as: Nat Cell Biol. 2015 Nov; 17(11): 1401–1411. Published online 2015 Oct 26. doi: 10.1038/ncb3258
PMCID:
PMC4628585
AbstractArticlePDF–2.5M
14.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
15.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
16.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
17.
A gain-of-function screen to identify genes that reduce lifespan in the adult of Drosophila melanogaster
Minoru Nakayama, Tomoki Ishibashi, Hiroyuki O Ishikawa, Hiroyasu Sato, Takao Usui, Takayuki Okuda, Hiroyuki Yashiro, Hironori Ishikawa, Yoshie Taikou, Asako Minami, Kengo Kato, Masataka Taki, Toshiro Aigaki, Wataru Gunji, Masaya Ohtsu, Yasufumi Murakami, Sei-ichi Tanuma, Alice Tsuboi, Mai Adachi, Junpei Kuroda, Takeshi Sasamura, Tomoko Yamakawa, Kenji Matsuno
BMC Genet. 2014; 15: 46. Published online 2014 Apr 16. doi: 10.1186/1471-2156-15-46
PMCID:
PMC4021436
AbstractArticlePDF–1.1M
18.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
19.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
20.
Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster
Muying Ying, Xiaotian Huang, Haijun Zhao, Yuehao Wu, Fusheng Wan, Chunhong Huang, Kemin Jie
PLoS One. 2011; 6(9): e23863. Published online 2011 Sep 2. doi: 10.1371/journal.pone.0023863
PMCID:
PMC3166285
AbstractArticlePDF–1.7M

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