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Items: 1 to 20 of 37

1.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
2.
Comprehensive characterization of the Hsp70 interactome reveals novel client proteins and interactions mediated by posttranslational modifications
Nitika, Bo Zheng, Linhao Ruan, Jake T. Kline, Siddhi Omkar, Jacek Sikora, Mara Texeira Torres, Yuhao Wang, Jade E. Takakuwa, Romain Huguet, Cinzia Klemm, Verónica A. Segarra, Matthew J. Winters, Peter M. Pryciak, Peter H. Thorpe, Kazuo Tatebayashi, Rong Li, Luca Fornelli, Andrew W. Truman
PLoS Biol. 2022 Oct; 20(10): e3001839. Published online 2022 Oct 21. doi: 10.1371/journal.pbio.3001839
PMCID:
PMC9629621
AbstractArticlePDF–3.4M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Nej1 interacts with Sae2 at DNA double-stranded breaks to inhibit DNA resection
Aditya Mojumdar, Nancy Adam, Jennifer A. Cobb
J Biol Chem. 2022 Jun; 298(6): 101937. Published online 2022 Apr 13. doi: 10.1016/j.jbc.2022.101937
PMCID:
PMC9117546
AbstractArticlePDF–2.7M
5.
Mapping yeast mitotic 5′ resection at base resolution reveals the sequence and positional dependence of nucleases in vivo
Dominic Bazzano, Stephanie Lomonaco, Thomas E Wilson
Nucleic Acids Res. 2021 Dec 16; 49(22): 12607–12621. Published online 2021 Jul 15. doi: 10.1093/nar/gkab597
PMCID:
PMC8682756
AbstractArticlePDF–4.9M
6.
Antagonistic relationship of NuA4 with the non-homologous end-joining machinery at DNA damage sites
Salar Ahmad, Valérie Côté, Xue Cheng, Gaëlle Bourriquen, Vasileia Sapountzi, Mohammed Altaf, Jacques Côté
PLoS Genet. 2021 Sep; 17(9): e1009816. Published online 2021 Sep 20. doi: 10.1371/journal.pgen.1009816
PMCID:
PMC8483352
AbstractArticlePDF–2.7M
7.
The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF
Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu
Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585
PMCID:
PMC8373142
AbstractArticlePDF–2.0M
8.
Nej1 Interacts with Mre11 to Regulate Tethering and Dna2 Binding at DNA Double-Strand Breaks
Aditya Mojumdar, Kyle Sorenson, Marcel Hohl, Mathias Toulouze, Susan P. Lees-Miller, Karine Dubrana, John H.J. Petrini, Jennifer A. Cobb
Cell Rep. Author manuscript; available in PMC 2019 Sep 16.
Published in final edited form as: Cell Rep. 2019 Aug 6; 28(6): 1564–1573.e3. doi: 10.1016/j.celrep.2019.07.018
PMCID:
PMC6746346
AbstractArticlePDF–1.6M
9.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K
10.
Pathologic Replication-Independent Endogenous DNA Double-Strand Breaks Repair Defect in Chronological Aging Yeast
Monnat Pongpanich, Maturada Patchsung, Apiwat Mutirangura
Front Genet. 2018; 9: 501. Published online 2018 Oct 25. doi: 10.3389/fgene.2018.00501
PMCID:
PMC6209823
AbstractArticlePDF–714K
11.
Ku DNA End-Binding Activity Promotes Repair Fidelity and Influences End-Processing During Nonhomologous End-Joining in Saccharomyces cerevisiae
Charlene H. Emerson, Christopher R. Lopez, Albert Ribes-Zamora, Erica J. Polleys, Christopher L. Williams, Lythou Yeo, Jacques E. Zaneveld, Rui Chen, Alison A. Bertuch
Genetics. 2018 May; 209(1): 115–128. Published online 2018 Mar 2. doi: 10.1534/genetics.117.300672
PMCID:
PMC5937190
AbstractArticlePDF–2.0M
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
The non-homologous end-joining factor Nej1 inhibits resection mediated by Dna2–Sgs1 nuclease-helicase at DNA double strand breaks
Kyle S. Sorenson, Brandi L. Mahaney, Susan P. Lees-Miller, Jennifer A. Cobb
J Biol Chem. 2017 Sep 1; 292(35): 14576–14586. Published online 2017 Jul 5. doi: 10.1074/jbc.M117.796011
PMCID:
PMC5582849
AbstractArticlePDF–1.7M
16.
Role of the yeast DNA repair protein Nej1 in end processing during the repair of DNA double strand breaks by non-homologous end joining
Hui Yang, Yoshihiro Matsumoto, Kelly M. Trujillo, Susan P. Lees-Miller, Mary Ann Osley, Alan E. Tomkinson
DNA Repair (Amst) Author manuscript; available in PMC 2016 Sep 27.
Published in final edited form as: DNA Repair (Amst). 2015 Jul; 31: 1–10. Published online 2015 Apr 21. doi: 10.1016/j.dnarep.2015.04.003
PMCID:
PMC5038981
AbstractArticlePDF–909K
17.
The C-terminus of Nej1 is critical for nuclear localization and non-homologous end-joining
Brandi L. Mahaney, Susan P. Lees-Miller, Jennifer A. Cobb
DNA Repair (Amst) Author manuscript; available in PMC 2015 Feb 1.
Published in final edited form as: DNA Repair (Amst). 2014 Feb; 14: 9–16. Published online 2013 Dec 24. doi: 10.1016/j.dnarep.2013.12.002
PMCID:
PMC4122420
AbstractArticlePDF–1.0M
18.
The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
G3 (Bethesda) 2014 Mar; 4(3): 523–537. Published online 2014 Jan 27. doi: 10.1534/g3.113.008763
PMCID:
PMC3962490
AbstractArticlePDF–2.3M
19.
Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast Saccharomyces cerevisiae
Katayoun Omidi, Mohsen Hooshyar, Matthew Jessulat, Bahram Samanfar, Megan Sanders, Daniel Burnside, Sylvain Pitre, Andrew Schoenrock, Jianhua Xu, Mohan Babu, Ashkan Golshani
PLoS One. 2014; 9(1): e87248. Published online 2014 Jan 31. doi: 10.1371/journal.pone.0087248
PMCID:
PMC3909046
AbstractArticlePDF–796K
20.
Lif1 SUMOylation and its role in non-homologous end-joining
Dana Vigasova, Prabha Sarangi, Peter Kolesar, Danuša Vlasáková, Zuzana Slezakova, Veronika Altmannova, Fedor Nikulenkov, Dorothea Anrather, Rainer Gith, Xiaolan Zhao, Miroslav Chovanec, Lumir Krejci
Nucleic Acids Res. 2013 May; 41(10): 5341–5353. Published online 2013 Apr 8. doi: 10.1093/nar/gkt236
PMCID:
PMC3664818
AbstractArticlePDF–2.4M

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