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Items: 1 to 20 of 67

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Ubiquitin-Related Modifier 1 (URM-1) Modulates Cx43 in Breast Cancer Cell Lines
Layal El-Hajjar, Jessica Saliba, Mario Karam, Abdullah Shaito, Hiba El Hajj, Marwan El-Sabban
Int J Mol Sci. 2023 Feb; 24(3): 2958. Published online 2023 Feb 3. doi: 10.3390/ijms24032958
PMCID:
PMC9917400
AbstractArticlePDF–5.0M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Yeast Nst1 is a novel component of P-bodies and is a specific suppressor of proteasome base assembly defects
Chin Leng Cheng, Michael K. Wong, Mark Hochstrasser
Mol Biol Cell. 2021 Oct 1; 32(20): ar6. doi: 10.1091/mbc.E21-04-0178
PMCID:
PMC8684758
AbstractArticlePDF–2.7M
5.
Role of SSD1 in Phenotypic Variation of Saccharomyces cerevisiae Strains Lacking DEG1-Dependent Pseudouridylation
Bahar Khonsari, Roland Klassen, Raffael Schaffrath
Int J Mol Sci. 2021 Aug; 22(16): 8753. Published online 2021 Aug 15. doi: 10.3390/ijms22168753
PMCID:
PMC8396022
AbstractArticlePDF–2.9M
6.
Misactivation of multiple starvation responses in yeast by loss of tRNA modifications
Alexander Bruch, Teresa Laguna, Falk Butter, Raffael Schaffrath, Roland Klassen
Nucleic Acids Res. 2020 Jul 27; 48(13): 7307–7320. Published online 2020 Jun 2. doi: 10.1093/nar/gkaa455
PMCID:
PMC7367188
AbstractArticlePDF–3.8M
7.
Transfer of the Septin Ring to Cytokinetic Remnants in ER stress Directs Age-Sensitive Cell Cycle Re-entry
Jesse T. Chao, Francisco Piña, Masayuki Onishi, Yifat Cohen, Ya-Shiuan Lai, Maya Schuldiner, Maho Niwa
Dev Cell. Author manuscript; available in PMC 2020 Oct 21.
Published in final edited form as: Dev Cell. 2019 Oct 21; 51(2): 173–191.e5. Published online 2019 Sep 26. doi: 10.1016/j.devcel.2019.08.017
PMCID:
PMC7085932
AbstractArticlePDF–2.5M
8.
Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast
Wei-Chun Au, Tianyi Zhang, Prashant K. Mishra, Jessica R. Eisenstatt, Robert L. Walker, Josefina Ocampo, Anthony Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David J. Clark, Paul S. Meltzer, Richard E. Baker, Chad Myers, Charles Boone, Peter Kaiser, Munira A. Basrai
PLoS Genet. 2020 Feb; 16(2): e1008597. Published online 2020 Feb 7. doi: 10.1371/journal.pgen.1008597
PMCID:
PMC7032732
AbstractArticlePDF–3.9M
9.
Redox requirements for ubiquitin-like urmylation of Ahp1, a 2-Cys peroxiredoxin from yeast
Cindy Brachmann, Lars Kaduhr, André Jüdes, Keerthiraju Ethiraju Ravichandran, James D. West, Sebastian Glatt, Raffael Schaffrath
Redox Biol. 2020 Feb; 30: 101438. Published online 2020 Jan 22. doi: 10.1016/j.redox.2020.101438
PMCID:
PMC7016264
AbstractArticlePDF–2.4M
10.
Unfolded Protein Response Suppression in Yeast by Loss of tRNA Modifications
Alexander Bruch, Roland Klassen, Raffael Schaffrath
Genes (Basel) 2018 Nov; 9(11): 516. Published online 2018 Oct 23. doi: 10.3390/genes9110516
PMCID:
PMC6275073
AbstractArticlePDF–1.3M
11.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
12.
Collaboration of tRNA modifications and elongation factor eEF1A in decoding and nonsense suppression
Roland Klassen, Raffael Schaffrath
Sci Rep. 2018; 8: 12749. Published online 2018 Aug 24. doi: 10.1038/s41598-018-31158-2
PMCID:
PMC6109124
AbstractArticlePDF–5.8M
13.
Mitochondria export sulfur species required for cytosolic tRNA thiolation
Alok Pandey, Jayashree Pain, Nathaniel Dziuba, Ashutosh K. Pandey, Andrew Dancis, Paul A. Lindahl, Debkumar Pain
Cell Chem Biol. Author manuscript; available in PMC 2019 Jun 21.
Published in final edited form as: Cell Chem Biol. 2018 Jun 21; 25(6): 738–748.e3. Published online 2018 Apr 26. doi: 10.1016/j.chembiol.2018.04.002
PMCID:
PMC6014917
AbstractArticlePDF–1.2M
14.
The Uba4 domain interplay is mediated via a thioester that is critical for tRNA thiolation through Urm1 thiocarboxylation
Martin Termathe, Sebastian A Leidel
Nucleic Acids Res. 2018 Jun 1; 46(10): 5171–5181. Published online 2018 Apr 30. doi: 10.1093/nar/gky312
Correction in:
Nucleic Acids Res. 2024 Jun 24; 52(11): 6730–6731.
PMCID:
PMC6007339
AbstractArticlePDF–1.6M
15.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
16.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
17.
Independent suppression of ribosomal +1 frameshifts by different tRNA anticodon loop modifications
Roland Klassen, Alexander Bruch, Raffael Schaffrath
RNA Biol. 2017; 14(9): 1252–1259. Published online 2016 Dec 12. doi: 10.1080/15476286.2016.1267098
PMCID:
PMC5699549
AbstractArticlePDF–785K
18.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
19.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
20.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M

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