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Items: 15

1.
The DEAD-box protein Dbp6 is an ATPase and RNA annealase interacting with the peptidyl transferase center (PTC) of the ribosome
Ali Khreiss, Régine Capeyrou, Simon Lebaron, Benjamin Albert, Katherine E Bohnsack, Markus T Bohnsack, Yves Henry, Anthony K Henras, Odile Humbert
Nucleic Acids Res. 2023 Jan 25; 51(2): 744–764. Published online 2023 Jan 5. doi: 10.1093/nar/gkac1196
PMCID:
PMC9881158
AbstractArticlePDF–4.1M
2.
Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation
Priya Bhutada, Sébastien Favre, Mariam Jaafar, Jutta Hafner, Laura Liesinger, Stefan Unterweger, Karin Bischof, Barbara Darnhofer, Devanarayanan Siva Sankar, Gerald Rechberger, Raghida Abou Merhi, Simon Lebaron, Ruth Birner-Gruenberger, Dieter Kressler, Anthony K Henras, Brigitte Pertschy
Nucleic Acids Res. 2022 Sep 23; 50(17): 10053–10077. Published online 2022 Aug 26. doi: 10.1093/nar/gkac724
PMCID:
PMC9508819
AbstractArticlePDF–16M
3.
Emergence of the primordial pre-60S from the 90S pre-ribosome
Sherif Ismail, Dirk Flemming, Matthias Thoms, José Vicente Gomes-Filho, Lennart Randau, Roland Beckmann, Ed Hurt
Cell Rep. 2022 Apr 5; 39(1): 110640. Published online 2022 Apr 5. doi: 10.1016/j.celrep.2022.110640
PMCID:
PMC8994135
AbstractArticle
4.
Association of snR190 snoRNA chaperone with early pre-60S particles is regulated by the RNA helicase Dbp7 in yeast
Mariam Jaafar, Julia Contreras, Carine Dominique, Sara Martín-Villanueva, Régine Capeyrou, Patrice Vitali, Olga Rodríguez-Galán, Carmen Velasco, Odile Humbert, Nicholas J. Watkins, Eduardo Villalobo, Katherine E. Bohnsack, Markus T. Bohnsack, Yves Henry, Raghida Abou Merhi, Jesús de la Cruz, Anthony K. Henras
Nat Commun. 2021; 12: 6153. Published online 2021 Oct 22. doi: 10.1038/s41467-021-26207-w
PMCID:
PMC8536666
AbstractArticlePDF–4.6M
5.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
6.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
AbstractArticlePDF–1.7M
7.
Identification of novel proteins associated with yeast snR30 small nucleolar RNA
Vincent Lemay, Ahmed Hossain, Yvonne N. Osheim, Ann L. Beyer, François Dragon
Nucleic Acids Res. 2011 Dec; 39(22): 9659–9670. Published online 2011 Sep 5. doi: 10.1093/nar/gkr659
PMCID:
PMC3239182
AbstractArticlePDF–13M
8.
Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface
Bon-Kyung Koo, Chin-Ju Park, Cesar F. Fernandez, Nicholas Chim, Yi Ding, Guillaume Chanfreau, Juli Feigon
J Mol Biol. Author manuscript; available in PMC 2012 Sep 2.
Published in final edited form as: J Mol Biol. 2011 Sep 2; 411(5): 927–942. Published online 2011 Jun 25. doi: 10.1016/j.jmb.2011.06.022
PMCID:
PMC3156286
AbstractArticlePDF–3.5M
9.
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
Dorota Piekna-Przybylska, Wayne A. Decatur, Maurille J. Fournier
RNA. 2007 Mar; 13(3): 305–312. doi: 10.1261/rna.373107
PMCID:
PMC1800513
AbstractArticlePDF–745K
10.
Optimization of Ribosome Structure and Function by rRNA Base Modification
Jennifer L. Baxter-Roshek, Alexey N. Petrov, Jonathan D. Dinman
PLoS One. 2007; 2(1): e174. Published online 2007 Jan 24. doi: 10.1371/journal.pone.0000174
PMCID:
PMC1766470
AbstractArticlePDF–370K
11.
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae
CLAIRE TORCHET, GWENAËL BADIS, FRÉDÉRIC DEVAUX, GINNY COSTANZO, MICHEL WERNER, ALAIN JACQUIER
RNA. 2005 Jun; 11(6): 928–938. doi: 10.1261/rna.2100905
PMCID:
PMC1370777
AbstractArticlePDF–592K
12.
Cotranscriptional Recruitment of the Pseudouridylsynthetase Cbf5p and of the RNA Binding Protein Naf1p during H/ACA snoRNP Assembly
Pok Kwan Yang, Coralie Hoareau, Carine Froment, Bernard Monsarrat, Yves Henry, Guillaume Chanfreau
Mol Cell Biol. 2005 Apr; 25(8): 3295–3304. doi: 10.1128/MCB.25.8.3295-3304.2005
PMCID:
PMC1069627
AbstractArticlePDF–414K
13.
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
Peter Schattner, Wayne A. Decatur, Carrie A. Davis, Manuel Ares, Jr, Maurille J. Fournier, Todd M. Lowe
Nucleic Acids Res. 2004; 32(14): 4281–4296. Published online 2004 Aug 11. doi: 10.1093/nar/gkh768
PMCID:
PMC514388
AbstractArticlePDF–709K
14.
The box H+ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase
Denis L.J. Lafontaine, Cécile Bousquet-Antonelli, Yves Henry, Michèle Caizergues-Ferrer, David Tollervey
Genes Dev. 1998 Feb 15; 12(4): 527–537. doi: 10.1101/gad.12.4.527
PMCID:
PMC316522
AbstractArticlePDF–1.1M
15.
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae.
D A Samarsky, M J Fournier
Nucleic Acids Res. 1999 Jan 1; 27(1): 161–164. doi: 10.1093/nar/27.1.161
PMCID:
PMC148121
SummaryPDF–517K

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