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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102350863.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 98363484.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 98291805.

The RNA export and RNA decay complexes THO and TRAMP prevent transcription-replication conflicts, DNA breaks, and CAG repeat contractions

Rebecca E. Brown, Xiaofeng A. Su, Stacey Fair, Katherine Wu, Lauren Verra, Robyn Jong, Kristin Andrykovich, Catherine H. Freudenreich

PLoS Biol. 2022 Dec; 20(12): e3001940. Published online 2022 Dec 27. doi: 10.1371/journal.pbio.3001940

PMCID:: PMC9829180

Abstract Article PDF–2.5M

Select item 93629296.

Initiator tRNA lacking 1-methyladenosine is targeted by the rapid tRNA decay pathway in evolutionarily distant yeast species

Monika Tasak, Eric M. Phizicky

PLoS Genet. 2022 Jul; 18(7): e1010215. Published online 2022 Jul 28. doi: 10.1371/journal.pgen.1010215

PMCID:: PMC9362929

Abstract Article PDF–4.8M

Select item 92860237.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 83679839.

Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae

Agnieszka Tudek, Paweł S. Krawczyk, Seweryn Mroczek, Rafał Tomecki, Matti Turtola, Katarzyna Matylla-Kulińska, Torben Heick Jensen, Andrzej Dziembowski

Nat Commun. 2021; 12: 4951. Published online 2021 Aug 16. doi: 10.1038/s41467-021-25251-w

PMCID:: PMC8367983

Abstract Article PDF–6.0M

Select item 829339810.

Non-Coding, RNAPII-Dependent Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State in S. cerevisiae

Emma Lesage, Jorge Perez-Fernandez, Sophie Queille, Christophe Dez, Olivier Gadal, Marta Kwapisz

Noncoding RNA. 2021 Sep; 7(3): 41. Published online 2021 Jul 11. doi: 10.3390/ncrna7030041

PMCID:: PMC8293398

Abstract Article PDF–1.7M

Select item 761096811.

The Exosome Subunit Rrp44 Plays a Direct Role in RNA Substrate Recognition

Claudia Schneider, James T. Anderson, David Tollervey

Mol Cell. Author manuscript; available in PMC 2021 Jun 11.

Published in final edited form as: Mol Cell. 2007 Jul 20; 27(2): 324–31. doi: 10.1016/j.molcel.2007.06.006

PMCID:: PMC7610968

Abstract Article PDF–1.4M

Select item 730533012.

Substrate specificity of the TRAMP nuclear surveillance complexes

Clémentine Delan-Forino, Christos Spanos, Juri Rappsilber, David Tollervey

Nat Commun. 2020; 11: 3122. Published online 2020 Jun 19. doi: 10.1038/s41467-020-16965-4

PMCID:: PMC7305330

Abstract Article PDF–2.5M

Select item 727317713.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 711011314.

Termination of non‐coding transcription in yeast relies on both an RNA Pol II CTD interaction domain and a CTD‐mimicking region in Sen1

Zhong Han, Olga Jasnovidova, Nouhou Haidara, Agnieszka Tudek, Karel Kubicek, Domenico Libri, Richard Stefl, Odil Porrua

EMBO J. 2020 Apr 1; 39(7): e101548. Published online 2020 Feb 28. doi: 10.15252/embj.2019101548

PMCID:: PMC7110113

Abstract Article PDF–1.7M

Select item 664889515.

Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME

Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy

Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317

PMCID:: PMC6648895

Abstract Article PDF–14M

Select item 654634916.

Perturbation of mRNP biogenesis reveals a dynamic landscape of the Rrp6-dependent surveillance machinery trafficking along the yeast genome

Kévin Moreau, Aurélia Le Dantec, Christine Mosrin-Huaman, Yves Bigot, Benoit Piégu, A. Rachid Rahmouni

RNA Biol. 2019 Jul; 16(7): 879–889. Published online 2019 Apr 21. doi: 10.1080/15476286.2019.1593745

PMCID:: PMC6546349

Abstract Article PDF–3.6M

Select item 632589317.

Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae

Nairita Maitra, Jayamani Anandhakumar, Heidi M. Blank, Craig D. Kaplan, Michael Polymenis

G3 (Bethesda) 2019 Jan; 9(1): 239–250. Published online 2018 Nov 21. doi: 10.1534/g3.118.200854

PMCID:: PMC6325893

Abstract Article PDF–1.3M

Select item 621856218.

Conserved Pbp1/Ataxin-2 regulates retrotransposon activity and connects polyglutamine expansion-driven protein aggregation to lifespan-controlling rDNA repeats

Lauren A. Ostrowski, Amanda C. Hall, Kirk J. Szafranski, Roxanne Oshidari, Karan J. Abraham, Janet N. Y. Chan, Christian Krustev, Kevin Zhang, Ashley Wang, Yupeng Liu, Ru Guo, Karim Mekhail

Commun Biol. 2018; 1: 187. Published online 2018 Nov 5. doi: 10.1038/s42003-018-0187-3