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Items: 1 to 20 of 29

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Ubiquitination drives COPI priming and Golgi SNARE localization
Swapneeta S Date, Peng Xu, Nathaniel L Hepowit, Nicholas S Diab, Jordan Best, Boyang Xie, Jiale Du, Eric R Strieter, Lauren P Jackson, Jason A MacGurn, Todd R Graham
eLife. 2022; 11: e80911. Published online 2022 Jul 29. doi: 10.7554/eLife.80911
PMCID:
PMC9374436
AbstractArticlePDF–4.3M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site
Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook
Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615
PMCID:
PMC8934651
AbstractArticlePDF–4.4M
6.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
7.
Reconstitution of autophagosome nucleation defines Atg9 vesicles as seeds for membrane formation
Justyna Sawa-Makarska, Verena Baumann, Nicolas Coudevylle, Sören von Bülow, Veronika Nogellova, Christine Abert, Martina Schuschnig, Martin Graef, Gerhard Hummer, Sascha Martens
Science. Author manuscript; available in PMC 2021 May 13.
Published in final edited form as: Science. 2020 Sep 4; 369(6508): eaaz7714. Published online 2020 Sep 4. doi: 10.1126/science.aaz7714
PMCID:
PMC7610778
AbstractArticlePDF–1.9M
8.
Selective defects in gene expression control genome instability in yeast splicing mutants
Annie S. Tam, Tianna S. Sihota, Karissa L. Milbury, Anni Zhang, Veena Mathew, Peter C. Stirling
Mol Biol Cell. 2019 Jan 15; 30(2): 191–200. doi: 10.1091/mbc.E18-07-0439
PMCID:
PMC6589566
AbstractArticlePDF–5.1M
9.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
10.
The Roles of the SNARE Protein Sed5 in Autophagy in Saccharomyces cerevisiae
Shenshen Zou, Dan Sun, Yongheng Liang
Mol Cells. 2017 Sep 30; 40(9): 643–654. Published online 2017 Sep 20. doi: 10.14348/molcells.2017.0030
PMCID:
PMC5638772
AbstractArticlePDF–8.9M
11.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
12.
Ubiquitin‐Activated Interaction Traps (UBAITs) identify E3 ligase binding partners
Hazel F O'Connor, Nancy Lyon, Justin W Leung, Poonam Agarwal, Caleb D Swaim, Kyle M Miller, Jon M Huibregtse
EMBO Rep. 2015 Dec; 16(12): 1699–1712. Published online 2015 Oct 27. doi: 10.15252/embr.201540620
PMCID:
PMC4693525
AbstractArticlePDF–693K
13.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
AbstractArticlePDF–1.7M
14.
Multiple and distinct strategies of yeast SNAREs to confer the specificity of membrane fusion
Noriko Furukawa, Joji Mima
Sci Rep. 2014; 4: 4277. Published online 2014 Mar 4. doi: 10.1038/srep04277
PMCID:
PMC3940976
AbstractArticlePDF–3.9M
15.
ER exit sites are physical and functional core autophagosome biogenesis components
Martin Graef, Jonathan R. Friedman, Christopher Graham, Mohan Babu, Jodi Nunnari
Mol Biol Cell. 2013 Sep 15; 24(18): 2918–2931. doi: 10.1091/mbc.E13-07-0381
PMCID:
PMC3771953
AbstractArticlePDF–2.2M
16.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
17.
La-motif–dependent mRNA association with Slf1 promotes copper detoxification in yeast
Luca Schenk, Dominik M. Meinel, Katja Strässer, André P. Gerber
RNA. 2012 Mar; 18(3): 449–461. doi: 10.1261/rna.028506.111
PMCID:
PMC3285933
AbstractArticlePDF–812K
18.
The yeast Batten disease orthologue Btn1 controls endosome–Golgi retrograde transport via SNARE assembly
Rachel Kama, Vydehi Kanneganti, Christian Ungermann, Jeffrey E. Gerst
J Cell Biol. 2011 Oct 17; 195(2): 203–215. doi: 10.1083/jcb.201102115
PMCID:
PMC3198160
AbstractArticlePDF–2.2M
19.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
20.
Phylogeny of the SNARE vesicle fusion machinery yields insights into the conservation of the secretory pathway in fungi
Nickias Kienle, Tobias H Kloepper, Dirk Fasshauer
BMC Evol Biol. 2009; 9: 19. Published online 2009 Jan 23. doi: 10.1186/1471-2148-9-19
PMCID:
PMC2639358
AbstractArticlePDF–1.2M

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