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Items: 1 to 20 of 54

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy
Hiroki Koide, Noriyuki Kodera, Shveta Bisht, Shoji Takada, Tsuyoshi Terakawa
PLoS Comput Biol. 2021 Jul; 17(7): e1009265. Published online 2021 Jul 30. doi: 10.1371/journal.pcbi.1009265
PMCID:
PMC8357123
AbstractArticlePDF–3.2M
6.
A role for condensin in mediating transcriptional adaptation to environmental stimuli
Lucy Lancaster, Harshil Patel, Gavin Kelly, Frank Uhlmann
Life Sci Alliance. 2021 Jul; 4(7): e202000961. Published online 2021 Jun 3. doi: 10.26508/lsa.202000961
PMCID:
PMC8200293
AbstractArticlePDF–3.0M
7.
SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase
Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston
J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130
PMCID:
PMC8094117
AbstractArticlePDF–8.1M
8.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
9.
Statistical mechanics of chromosomes: in vivo and in silico approaches reveal high-level organization and structure arise exclusively through mechanical feedback between loop extruders and chromatin substrate properties
Yunyan He, Josh Lawrimore, Diana Cook, Elizabeth Erin Van Gorder, Solenn Claire De Larimat, David Adalsteinsson, M Gregory Forest, Kerry Bloom
Nucleic Acids Res. 2020 Nov 18; 48(20): 11284–11303. Published online 2020 Oct 20. doi: 10.1093/nar/gkaa871
PMCID:
PMC7672462
AbstractArticlePDF–8.4M
10.
Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism
Byung-Gil Lee, Fabian Merkel, Matteo Allegretti, Markus Hassler, Christopher Cawood, Léa Lecomte, Francis J. O’Reilly, Ludwig R. Sinn, Pilar Gutierrez-Escribano, Marc Kschonsak, Sol Bravo, Takanori Nakane, Juri Rappsilber, Luis Aragon, Martin Beck, Jan Löwe, Christian H. Haering
Nat Struct Mol Biol. Author manuscript; available in PMC 2021 Apr 27.
Published in final edited form as: Nat Struct Mol Biol. 2020 Aug 1; 27(8): 743–751. Published online 2020 Jul 13. doi: 10.1038/s41594-020-0457-x
PMCID:
PMC7610691
AbstractArticlePDF–6.8M
11.
Phospho-regulation of the Shugoshin - Condensin interaction at the centromere in budding yeast
Galal Yahya, Yehui Wu, Karolina Peplowska, Jennifer Röhrl, Young-Min Soh, Frank Bürmann, Stephan Gruber, Zuzana Storchova
PLoS Genet. 2020 Aug; 16(8): e1008569. Published online 2020 Aug 18. doi: 10.1371/journal.pgen.1008569
PMCID:
PMC7454948
AbstractArticlePDF–2.7M
12.
Real-time imaging of DNA loop extrusion by condensin
Mahipal Ganji, Indra A. Shaltiel, Shveta Bisht, Eugene Kim, Ana Kalichava, Christian H. Haering, Cees Dekker
Science. Author manuscript; available in PMC 2019 Jan 11.
Published in final edited form as: Science. 2018 Apr 6; 360(6384): 102–105. Published online 2018 Feb 22. doi: 10.1126/science.aar7831
PMCID:
PMC6329450
AbstractArticlePDF–2.1M
13.
Condensin Depletion Causes Genome Decompaction Without Altering the Level of Global Gene Expression in Saccharomyces cerevisiae
Matthew Robert Paul, Tovah Elise Markowitz, Andreas Hochwagen, Sevinç Ercan
Genetics. 2018 Sep; 210(1): 331–344. Published online 2018 Jul 3. doi: 10.1534/genetics.118.301217
PMCID:
PMC6116964
AbstractArticlePDF–2.6M
14.
Live-Cell Imaging of Chromatin Condensation Dynamics by CRISPR
Yuan Xue, Murat Acar
iScience. 2018 Jun 29; 4: 216–235. Published online 2018 Jun 5. doi: 10.1016/j.isci.2018.06.001
PMCID:
PMC6048970
AbstractArticlePDF–7.6M
15.
The condensin complex is a mechanochemical motor that translocates along DNA
Tsuyoshi Terakawa, Shveta Bisht, Jorine M. Eeftens, Cees Dekker, Christian H. Haering, Eric C. Greene
Science. Author manuscript; available in PMC 2018 May 3.
Published in final edited form as: Science. 2017 Nov 3; 358(6363): 672–676. Published online 2017 Sep 7. doi: 10.1126/science.aan6516
PMCID:
PMC5862036
AbstractArticlePDF–989K
16.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
17.
Real‐time detection of condensin‐driven DNA compaction reveals a multistep binding mechanism
Jorine M Eeftens, Shveta Bisht, Jacob Kerssemakers, Marc Kschonsak, Christian H Haering, Cees Dekker
EMBO J. 2017 Dec 1; 36(23): 3448–3457. Published online 2017 Nov 8. doi: 10.15252/embj.201797596
PMCID:
PMC5709735
AbstractArticlePDF–1.2M
18.
Exploring Quantitative Yeast Phenomics with Single Cell Analysis of DNA Damage Foci
Erin B. Styles, Karen J. Founk, Lee A. Zamparo, Tina L. Sing, Dogus Altintas, Cyril Ribeyre, Virginie Ribaud, Jacques Rougemont, David Mayhew, Michael Costanzo, Matej Usaj, Adrian J. Verster, Elizabeth N. Koch, Daniele Novarina, Marco Graf, Brian Luke, Marco Muzi-Falconi, Chad L. Myers, Robi David Mitra, David Shore, Grant W. Brown, Zhaolei Zhang, Charles Boone, Brenda J. Andrews
Cell Syst. Author manuscript; available in PMC 2017 Nov 16.
Published in final edited form as: Cell Syst. 2016 Sep 28; 3(3): 264–277.e10. Published online 2016 Sep 8. doi: 10.1016/j.cels.2016.08.008
PMCID:
PMC5689480
AbstractArticlePDF–2.9M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes
Marc Kschonsak, Fabian Merkel, Shveta Bisht, Jutta Metz, Vladimir Rybin, Markus Hassler, Christian H. Haering
Cell. 2017 Oct 19; 171(3): 588–600.e24. doi: 10.1016/j.cell.2017.09.008
PMCID:
PMC5651216
AbstractArticle

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