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Items: 1 to 20 of 32

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Comprehensive and quantitative analysis of G1 cyclins. A tool for studying the cell cycle
Elisabet Bállega, Reyes Carballar, Bàrbara Samper, Natalia Ricco, Mariana P. Ribeiro, Samuel Bru, Javier Jiménez, Josep Clotet
PLoS One. 2019; 14(6): e0218531. Published online 2019 Jun 25. doi: 10.1371/journal.pone.0218531
PMCID:
PMC6592645
AbstractArticlePDF–2.5M
3.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
4.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
5.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
6.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
7.
The GTPase-Activating Protein Rga1 Interacts with Rho3 GTPase and May Regulate Its Function in Polarized Growth in Budding Yeast
Fei He, Wen-Chao Nie, Zongtian Tong, Si-Min Yuan, Ting Gong, Yuan Liao, Erfei Bi, Xiang-Dong Gao
PLoS One. 2015; 10(4): e0123326. Published online 2015 Apr 10. doi: 10.1371/journal.pone.0123326
PMCID:
PMC4393305
AbstractArticlePDF–1.0M
8.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
9.
Whi3, an S. cerevisiae RNA-Binding Protein, Is a Component of Stress Granules That Regulates Levels of Its Target mRNAs
Kristen J. Holmes, Daniel M. Klass, Evan L. Guiney, Martha S. Cyert
PLoS One. 2013; 8(12): e84060. Published online 2013 Dec 27. doi: 10.1371/journal.pone.0084060
PMCID:
PMC3873981
AbstractArticlePDF–11M
10.
CDK-Dependent Hsp70 Phosphorylation Controls G1 Cyclin Abundance and Cell-Cycle Progression
Andrew W. Truman, Kolbrun Kristjansdottir, Donald Wolfgeher, Naushaba Hasin, Sigrun Polier, Hong Zhang, Sarah Perrett, Chrisostomos Prodromou, Gary W. Jones, Stephen J. Kron
Cell. 2012 Dec 7; 151(6): 1308–1318. doi: 10.1016/j.cell.2012.10.051
PMCID:
PMC3778871
AbstractArticlePDF–1.3M
11.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
12.
SCFCdc4 Enables Mating Type Switching in Yeast by Cyclin-Dependent Kinase-Mediated Elimination of the Ash1 Transcriptional Repressor
Qingquan Liu, Brett Larsen, Marketa Ricicova, Stephen Orlicky, Hille Tekotte, Xiaojing Tang, Karen Craig, Adam Quiring, Thierry Le Bihan, Carl Hansen, Frank Sicheri, Mike Tyers
Mol Cell Biol. 2011 Feb; 31(3): 584–598. Published online 2010 Nov 22. doi: 10.1128/MCB.00845-10
PMCID:
PMC3028614
AbstractArticlePDF–3.2M
13.
Pho85 Kinase, a Cyclin-Dependent Kinase, Regulates Nuclear Accumulation of the Rim101 Transcription Factor in the Stress Response of Saccharomyces cerevisiae
Masafumi Nishizawa, Mirai Tanigawa, Michio Hayashi, Tatsuya Maeda, Yoshiaki Yazaki, Yasushi Saeki, Akio Toh-e
Eukaryot Cell. 2010 Jun; 9(6): 943–951. doi: 10.1128/EC.00247-09
PMCID:
PMC2901641
AbstractArticlePDF–1.6M
14.
Functional Organization of the S. cerevisiae Phosphorylation Network
Dorothea Fiedler, Hannes Braberg, Monika Mehta, Gal Chechik, Gerard Cagney, Paromita Mukherjee, Andrea C. Silva, Michael Shales, Sean R. Collins, Sake van Wageningen, Patrick Kemmeren, Frank C. P. Holstege, Jonathan S. Weissman, Michael-Christopher Keogh, Daphne Koller, Kevan M. Shokat, Nevan J. Krogan
Cell. Author manuscript; available in PMC 2010 Apr 19.
Published in final edited form as: Cell. 2009 Mar 6; 136(5): 952–963. doi: 10.1016/j.cell.2008.12.039
PMCID:
PMC2856666
AbstractArticlePDF–3.9M
15.
The Rts1 Regulatory Subunit of Protein Phosphatase 2A Is Required for Control of G1 Cyclin Transcription and Nutrient Modulation of Cell Size
Karen Artiles, Stephanie Anastasia, Derek McCusker, Douglas R. Kellogg
PLoS Genet. 2009 Nov; 5(11): e1000727. Published online 2009 Nov 13. doi: 10.1371/journal.pgen.1000727
PMCID:
PMC2770260
AbstractArticlePDF–5.3M
16.
Regulation of Cell Polarity through Phosphorylation of Bni4 by Pho85 G1 Cyclin-dependent Kinases in Saccharomyces cerevisiae
Jian Zou, Helena Friesen, Jennifer Larson, Dongqing Huang, Mike Cox, Kelly Tatchell, Brenda Andrews
Mol Biol Cell. 2009 Jul 15; 20(14): 3239–3250. doi: 10.1091/mbc.E08-12-1255
PMCID:
PMC2710841
AbstractArticlePDF–2.7M
17.
Whi3, a Developmental Regulator of Budding Yeast, Binds a Large Set of mRNAs Functionally Related to the Endoplasmic Reticulum
Neus Colomina, Francisco Ferrezuelo, Hongyin Wang, Martí Aldea, Eloi Garí
J Biol Chem. 2008 Oct 17; 283(42): 28670–28679. doi: 10.1074/jbc.M804604200
PMCID:
PMC2661415
AbstractArticlePDF–680K
18.
Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast
Yuko Hasegawa, Kenji Irie, André P. Gerber
RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508
PMCID:
PMC2578860
AbstractArticlePDF–1.3M
19.
Annotating novel genes by integrating synthetic lethals and genomic information
Daniel Schöner, Markus Kalisch, Christian Leisner, Lukas Meier, Marc Sohrmann, Mahamadou Faty, Yves Barral, Matthias Peter, Wilhelm Gruissem, Peter Bühlmann
BMC Syst Biol. 2008; 2: 3. Published online 2008 Jan 14. doi: 10.1186/1752-0509-2-3
PMCID:
PMC2258006
AbstractArticlePDF–523K
20.
Activation of the Cdc42p GTPase by cyclin-dependent protein kinases in budding yeast
Richelle Sopko, Dongqing Huang, Jeffrey C Smith, Daniel Figeys, Brenda J Andrews
EMBO J. 2007 Oct 31; 26(21): 4487–4500. Published online 2007 Sep 13. doi: 10.1038/sj.emboj.7601847
PMCID:
PMC2063489
AbstractArticlePDF–492K

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