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Select item 112946051.

Receptor-mediated cargo hitchhiking on bulk autophagy

Eigo Takeda, Takahiro Isoda, Sachiko Hosokawa, Yu Oikawa, Shukun Hotta-Ren, Alexander I May, Yoshinori Ohsumi

EMBO J. 2024 Aug; 43(15): 3116–3140. Published online 2024 May 16. doi: 10.1038/s44318-024-00091-8

PMCID:: PMC11294605

Abstract Article PDF–5.6M

Select item 108973152.

Decoding the function of Atg13 phosphorylation reveals a role of Atg11 in bulk autophagy initiation

Anuradha Bhattacharya, Raffaela Torggler, Wolfgang Reiter, Natalie Romanov, Mariya Licheva, Akif Ciftci, Muriel Mari, Lena Kolb, Dominik Kaiser, Fulvio Reggiori, Gustav Ammerer, David M Hollenstein, Claudine Kraft

EMBO Rep. 2024 Feb; 25(2): 813–831. Published online 2024 Jan 17. doi: 10.1038/s44319-023-00055-9

PMCID:: PMC10897315

Abstract Article PDF–5.5M

Select item 108724773.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102350865.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 101968716.

The dynamin Vps1 mediates Atg9 transport to the sites of autophagosome formation

Henning Arlt, Babu Raman, Yasmina Filali-Mouncef, Yan Hu, Alexandre Leytens, Ralph Hardenberg, Rodrigo Guimarães, Franziska Kriegenburg, Muriel Mari, Iwona I. Smaczynska-de Rooij, Kathryn R. Ayscough, Jörn Dengjel, Christian Ungermann, Fulvio Reggiori

J Biol Chem. 2023 May; 299(5): 104712. Published online 2023 Apr 14. doi: 10.1016/j.jbc.2023.104712

PMCID:: PMC10196871

Abstract Article PDF–2.2M

Select item 101129787.

Lakhan Ekal, Abdulaziz M. S. Alqahtani, Ewald H. Hettema

J Cell Sci. 2023 Mar 15; 136(6): jcs246348. Published online 2023 Mar 24. doi: 10.1242/jcs.246348

PMCID:: PMC10112978

Abstract Article

Select item 99950778.

The TORC1 activates Rpd3L complex to deacetylate Ino80 and H2A.Z and repress autophagy

Xin Li, Qianyun Mei, Qi Yu, Min Wang, Fei He, Duncheng Xiao, Huan Liu, Feng Ge, Xilan Yu, Shanshan Li

Sci Adv. 2023 Mar; 9(10): eade8312. Published online 2023 Mar 8. doi: 10.1126/sciadv.ade8312

PMCID:: PMC9995077

Abstract Article PDF–2.7M

Select item 98800279.

The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex

Mashun Onishi, Mitsutaka Kubota, Lan Duan, Yuan Tian, Koji Okamoto

Life Sci Alliance. 2023 Apr; 6(4): e202201640. Published online 2023 Jan 25. doi: 10.26508/lsa.202201640

PMCID:: PMC9880027

Abstract Article PDF–3.2M

Select item 972827910.

Mitophagy Improves Ethanol Tolerance in Yeast: Regulation by Mitochondrial Reactive Oxygen Species in Saccharomyces cerevisiae

Hongjuan Jing, Huanhuan Liu, Zhang Lu, Cui liuqing,, Xiaorong Tan

J Microbiol Biotechnol. 2020 Dec 28; 30(12): 1876–1884. Published online 2020 Sep 25. doi: 10.4014/jmb.2004.04073

PMCID:: PMC9728279

Abstract Article PDF–2.8M

Select item 928602311.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 920981112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 883316213.

ER-phagy requires the assembly of actin at sites of contact between the cortical ER and endocytic pits

Dongmei Liu, Muriel Mari, Xia Li, Fulvio Reggiori, Susan Ferro-Novick, Peter Novick

Proc Natl Acad Sci U S A. 2022 Feb 8; 119(6): e2117554119. Published online 2022 Jan 31. doi: 10.1073/pnas.2117554119

PMCID:: PMC8833162

Abstract Article PDF–2.4M

Select item 881466814.

Mechanism of Atg9 recruitment by Atg11 in the cytoplasm-to-vacuole targeting pathway

Nicolas Coudevylle, Bartłomiej Banaś, Verena Baumann, Martina Schuschnig, Anna Zawadzka-Kazimierczuk, Wiktor Koźmiński, Sascha Martens

J Biol Chem. 2022 Feb; 298(2): 101573. Published online 2022 Jan 8. doi: 10.1016/j.jbc.2022.101573

PMCID:: PMC8814668

Abstract Article PDF–2.3M

Select item 880515715.

Mapping Critical Residues in ATG11’s Coiled-Coil 2 Domain that Block Multiple Interactions and Disrupt Selective Autophagy

Mitchell D. Meyer, Jasmine Winzeler, Sophia M. Taylor, Alex Kilgore, Kimberly Edicha, Chase Chitwood, Zachary Spearin, S. K. Nadia Rahman Silvia, Ronith Chakraborty, Jesse E. Smith, Bridget Kennedy, Carson Zois, Hayley Cawthon, Mukiri Gilruth, Steven K. Backues

Front Cell Dev Biol. 2021; 9: 775364. Published online 2022 Jan 18. doi: 10.3389/fcell.2021.775364

PMCID:: PMC8805157

Abstract Article PDF–2.4M

Select item 866490016.

Spatial control of avidity regulates initiation and progression of selective autophagy

David M. Hollenstein, Mariya Licheva, Nicole Konradi, David Schweida, Hector Mancilla, Muriel Mari, Fulvio Reggiori, Claudine Kraft

Nat Commun. 2021; 12: 7194. Published online 2021 Dec 10. doi: 10.1038/s41467-021-27420-3

PMCID:: PMC8664900

Abstract Article PDF–3.6M

Select item 857501817.

Atg39 selectively captures inner nuclear membrane into lumenal vesicles for delivery to the autophagosome

Sunandini Chandra, Philip J. Mannino, David J. Thaller, Nicholas R. Ader, Megan C. King, Thomas J. Melia, C. Patrick Lusk

J Cell Biol. 2021 Dec 6; 220(12): e202103030. Published online 2021 Oct 29. doi: 10.1083/jcb.202103030

PMCID:: PMC8575018

Abstract Article PDF–8.8M

Select item 810851118.

Atg15 in Saccharomyces cerevisiae consists of two functionally distinct domains

Eri Hirata, Kyo Shirai, Tatsuya Kawaoka, Kosuke Sato, Fumito Kodama, Kuninori Suzuki

Mol Biol Cell. 2021 Apr 15; 32(8): 645–663. doi: 10.1091/mbc.E20-07-0500

PMCID:: PMC8108511

Abstract Article PDF–3.9M

Select item 800713619.

Atg11-mediated activation of Atg1 kinase in fission yeast

Zhao-Qian Pan, Li-Lin Du

Autophagy. 2021; 17(2): 584–585. Published online 2020 Nov 18. doi: 10.1080/15548627.2020.1846303

PMCID:: PMC8007136

Abstract Article PDF–226K

Select item 775888020.

Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon

Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012