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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105871503.

The increase in cell death rates in caloric restricted cells of the yeast helicase mutant rrm3 is Sir complex dependent

Andreas S. Ivessa, Sukhwinder Singh

Sci Rep. 2023; 13: 17832. Published online 2023 Oct 19. doi: 10.1038/s41598-023-45125-z

PMCID:: PMC10587150

Abstract Article PDF–3.6M

Select item 102350864.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 101360535.

Spt3 and Spt8 Are Involved in the Formation of a Silencing Boundary by Interacting with TATA-Binding Protein

Kazuma Kamata, Takahito Ayano, Masaya Oki

Biomolecules. 2023 Apr; 13(4): 619. Published online 2023 Mar 30. doi: 10.3390/biom13040619

PMCID:: PMC10136053

Abstract Article PDF–2.6M

Select item 92860236.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88308858.

Distinguishing between recruitment and spread of silent chromatin structures in Saccharomyces cerevisiae

Molly Brothers, Jasper Rine

eLife. 2022; 11: e75653. Published online 2022 Jan 24. doi: 10.7554/eLife.75653

PMCID:: PMC8830885

Abstract Article PDF–2.0M

Select item 87247679.

Sir3 heterochromatin protein promotes non‐homologous end joining by direct inhibition of Sae2

Hélène Bordelet, Rafaël Costa, Clémentine Brocas, Jordane Dépagne, Xavier Veaute, Didier Busso, Amandine Batté, Raphaël Guérois, Stéphane Marcand, Karine Dubrana

EMBO J. 2022 Jan 4; 41(1): e108813. Published online 2021 Nov 24. doi: 10.15252/embj.2021108813

PMCID:: PMC8724767

Abstract Article PDF–1.5M

Select item 866448010.

Suppression of telomere capping defects of Saccharomyces cerevisiae yku70 and yku80 mutants by telomerase

Cory L Holland, Brian A Sanderson, James K Titus, Monica F Weis, Angelica M Riojas, Eric Malczewskyj, Brian M Wasko, L Kevin Lewis

G3 (Bethesda) 2021 Dec; 11(12): jkab359. Published online 2021 Oct 13. doi: 10.1093/g3journal/jkab359

PMCID:: PMC8664480

Abstract Article PDF–1023K

Select item 850749211.

Set4 regulates stress response genes and coordinates histone deacetylases within yeast subtelomeres

Yogita Jethmalani, Khoa Tran, Maraki Y Negesse, Winny Sun, Mark Ramos, Deepika Jaiswal, Meagan Jezek, Shandon Amos, Eric Joshua Garcia, DoHwan Park, Erin M Green

Life Sci Alliance. 2021 Dec; 4(12): e202101126. Published online 2021 Oct 8. doi: 10.26508/lsa.202101126

PMCID:: PMC8507492

Abstract Article PDF–3.4M

Select item 813670912.

Dynamics of SAS-I mediated H4 K16 acetylation during DNA replication in yeast

Mark Boltengagen, Anke Samel-Pommerencke, David Fechtig, Ann E. Ehrenhofer-Murray

PLoS One. 2021; 16(5): e0251660. Published online 2021 May 20. doi: 10.1371/journal.pone.0251660

PMCID:: PMC8136709

Abstract Article PDF–2.0M

Select item 812838613.

A novel allele of SIR2 reveals a heritable intermediate state of gene silencing

Delaney Farris, Daniel S Saxton, Jasper Rine

Genetics. 2021 May; 218(1): iyab041. Published online 2021 Mar 13. doi: 10.1093/genetics/iyab041

PMCID:: PMC8128386

Abstract Article PDF–1.4M

Select item 809411714.

SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase

Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston

J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130

PMCID:: PMC8094117

Abstract Article PDF–8.1M

Select item 806601915.

Sir4 Deficiency Reverses Cell Senescence by Sub-Telomere Recombination

Jun Liu, Xiaojing Hong, Lihui Wang, Chao-Ya Liang, Jun-Ping Liu

Cells. 2021 Apr; 10(4): 778. Published online 2021 Apr 1. doi: 10.3390/cells10040778

PMCID:: PMC8066019

Abstract Article PDF–4.6M

Select item 791945316.

Sir3 mediates long-range chromosome interactions in budding yeast

Myriam Ruault, Vittore F. Scolari, Luciana Lazar-Stefanita, Antoine Hocher, Isabelle Loïodice, Romain Koszul, Angela Taddei

Genome Res. 2021 Mar; 31(3): 411–425. doi: 10.1101/gr.267872.120

PMCID:: PMC7919453

Abstract Article PDF–9.3M

Select item 767243317.

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2

Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit

Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964

PMCID:: PMC7672433

Abstract Article PDF–6.0M

Select item 743848618.

The Rad53^CHK1/CHK2-Spt21^NPAT and Tel1^ATM axes couple glucose tolerance to histone dosage and subtelomeric silencing

Christopher Bruhn, Arta Ajazi, Elisa Ferrari, Michael Charles Lanz, Renaud Batrin, Ramveer Choudhary, Adhish Walvekar, Sunil Laxman, Maria Pia Longhese, Emmanuelle Fabre, Marcus Bustamente Smolka, Marco Foiani

Nat Commun. 2020; 11: 4154. Published online 2020 Aug 19. doi: 10.1038/s41467-020-17961-4