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Items: 20

1.
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing
Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide
RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707
PMCID:
PMC10761121
AbstractArticlePDF–2.5M
2.
Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono
J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343
PMCID:
PMC9437848
AbstractArticlePDF–2.0M
3.
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono
J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094
Correction in:
J Biol Chem. 2022 Jun; 298(6): 102081.
PMCID:
PMC8446793
AbstractArticlePDF–1.6M
4.
The mitochondrial permeability transition pore activates the mitochondrial unfolded protein response and promotes aging
Suzanne Angeli, Anna Foulger, Manish Chamoli, Tanuja Harshani Peiris, Akos Gerencser, Azar Asadi Shahmirzadi, Julie Andersen, Gordon Lithgow
eLife. 2021; 10: e63453. Published online 2021 Sep 1. doi: 10.7554/eLife.63453
PMCID:
PMC8410078
AbstractArticlePDF–4.8M
5.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
6.
Mitochondrial Permeability Uncouples Elevated Autophagy and Lifespan Extension
Ben Zhou, Johannes Kreuzer, Caroline Kumsta, Lianfeng Wu, Kimberli J. Kamer, Lucydalila Cedillo, Yuyao Zhang, Sainan Li, Michael C. Kacergis, Christopher M. Webster, Geza Fejes-Toth, Aniko Naray-Fejes-Toth, Sudeshna Das, Malene Hansen, Wilhelm Haas, Alexander A. Soukas
Cell. Author manuscript; available in PMC 2020 Apr 4.
Published in final edited form as: Cell. 2019 Apr 4; 177(2): 299–314.e16. Published online 2019 Mar 28. doi: 10.1016/j.cell.2019.02.013
PMCID:
PMC6610881
AbstractArticlePDF–3.0M
7.
Global Proteomic Response of Caenorhabditis elegans Against PemKSa Toxin
Dilawar Ahmad Mir, Krishnaswamy Balamurugan
Front Cell Infect Microbiol. 2019; 9: 172. Published online 2019 May 31. doi: 10.3389/fcimb.2019.00172
PMCID:
PMC6555269
AbstractArticlePDF–3.7M
8.
Adaptive F-actin polymerization and localized ATP production drive basement membrane invasion in the absence of MMPs
Laura C. Kelley, Qiuyi Chi, Rodrigo Cáceres, Eric Hastie, Adam J. Schindler, Yue Jiang, David Q. Matus, Julie Plastino, David R. Sherwood
Dev Cell. Author manuscript; available in PMC 2020 Feb 11.
Published in final edited form as: Dev Cell. 2019 Feb 11; 48(3): 313–328.e8. Published online 2019 Jan 24. doi: 10.1016/j.devcel.2018.12.018
PMCID:
PMC6372315
AbstractArticlePDF–2.8M
9.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
10.
In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics
Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach
Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975
PMCID:
PMC4858945
AbstractArticlePDF–3.1M
11.
A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes
Olivier Zugasti, Nishant Thakur, Jérôme Belougne, Barbara Squiban, C. Léopold Kurz, Julien Soulé, Shizue Omi, Laurent Tichit, Nathalie Pujol, Jonathan J. Ewbank
BMC Biol. 2016; 14: 35. Published online 2016 Apr 29. doi: 10.1186/s12915-016-0256-3
PMCID:
PMC4850687
AbstractArticlePDF–2.9M
12.
Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states
Dan Tan, Qiang Li, Mei-Jun Zhang, Chao Liu, Chengying Ma, Pan Zhang, Yue-He Ding, Sheng-Bo Fan, Li Tao, Bing Yang, Xiangke Li, Shoucai Ma, Junjie Liu, Boya Feng, Xiaohui Liu, Hong-Wei Wang, Si-Min He, Ning Gao, Keqiong Ye, Meng-Qiu Dong, Xiaoguang Lei
eLife. 2016; 5: e12509. Published online 2016 Mar 8. doi: 10.7554/eLife.12509
PMCID:
PMC4811778
AbstractArticlePDF–16M
13.
The ZFP-1(AF10)/DOT-1 Complex Opposes H2B Ubiquitination to Reduce Pol II Transcription
Germano Cecere, Sebastian Hoersch, Morten B. Jensen, Shiv Dixit, Alla Grishok
Mol Cell. Author manuscript; available in PMC 2014 Jun 27.
Published in final edited form as: Mol Cell. 2013 Jun 27; 50(6): 894–907. doi: 10.1016/j.molcel.2013.06.002
PMCID:
PMC3784254
AbstractArticlePDF–2.8M
14.
F-actin asymmetry and the endoplasmic reticulum–associated TCC-1 protein contribute to stereotypic spindle movements in the Caenorhabditis elegans embryo
Christian W. H. Berends, Javier Muñoz, Vincent Portegijs, Ruben Schmidt, Ilya Grigoriev, Mike Boxem, Anna Akhmanova, Albert J. R. Heck, Sander van den Heuvel
Mol Biol Cell. 2013 Jul 15; 24(14): 2201–2215. doi: 10.1091/mbc.E13-02-0076
PMCID:
PMC3708726
AbstractArticlePDF–2.1M
15.
SH3 interactome conserves general function over specific form
Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader
Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9
PMCID:
PMC3658277
AbstractArticlePDF–2.3M
16.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
17.
A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding
Nicolas Lenfant, Jolanta Polanowska, Sophie Bamps, Shizue Omi, Jean-Paul Borg, Jérôme Reboul
BMC Genomics. 2010; 11: 671. Published online 2010 Nov 26. doi: 10.1186/1471-2164-11-671
PMCID:
PMC3091786
AbstractArticlePDF–1.2M
18.
Adenine Nucleotide Translocator Cooperates with Core Cell Death Machinery To Promote Apoptosis in Caenorhabditis elegans
Qinfang Shen, Fengsong Qin, Zhiyang Gao, Jie Cui, Hui Xiao, Zhiheng Xu, Chonglin Yang
Mol Cell Biol. 2009 Jul; 29(14): 3881–3893. Published online 2009 May 4. doi: 10.1128/MCB.01509-08
PMCID:
PMC2704750
AbstractArticlePDF–1.8M
19.
A protein domain-based interactome network for C. elegans early embryogenesis
Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal
Cell. Author manuscript; available in PMC 2009 Aug 8.
Published in final edited form as: Cell. 2008 Aug 8; 134(3): 534–545. doi: 10.1016/j.cell.2008.07.009
Correction in:
volume 151 on page 1633
PMCID:
PMC2596478
AbstractArticlePDF–4.0M
20.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M

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