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Select item 97134311.

Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila

Kate Ding, Elizabeth C Barretto, Michael Johnston, Byoungchun Lee, Marco Gallo, Savraj S Grewal

G3 (Bethesda) 2022 Dec; 12(12): jkac263. Published online 2022 Oct 6. doi: 10.1093/g3journal/jkac263

PMCID:: PMC9713431

Abstract Article PDF–1.0M

Select item 95260752.

In search of a Drosophila core cellular network with single-cell transcriptome data

Ming Yang, Benjamin R Harrison, Daniel E L Promislow

G3 (Bethesda) 2022 Oct; 12(10): jkac212. Published online 2022 Aug 17. doi: 10.1093/g3journal/jkac212

PMCID:: PMC9526075

Abstract Article PDF–4.7M

Select item 92378403.

Ribbon boosts ribosomal protein gene expression to coordinate organ form and function

Rajprasad Loganathan, Daniel C. Levings, Ji Hoon Kim, Michael B. Wells, Hannah Chiu, Yifan Wu, Matthew Slattery, Deborah J. Andrew

J Cell Biol. 2022 Apr 4; 221(4): e202110073. Published online 2022 Feb 23. doi: 10.1083/jcb.202110073

PMCID:: PMC9237840

Abstract Article PDF–12M

Select item 86644864.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 74799385.

Ribosomal proteins: mutant phenotypes by the numbers and associated gene expression changes

Michael Polymenis

Open Biol. 2020 Aug; 10(8): 200114. Published online 2020 Aug 19. doi: 10.1098/rsob.200114

PMCID:: PMC7479938

Abstract Article PDF–1.0M

Select item 71168236.

Proteotoxic stress is a driver of the loser status and of cell competition

Michael E. Baumgartner, Michael P. Dinan, Paul F. Langton, Iwo Kucinski, Eugenia Piddini

Nat Cell Biol. Author manuscript; available in PMC 2021 Jul 25.

Published in final edited form as: Nat Cell Biol. 2021 Feb 1; 23(2): 136–146. Published online 2021 Jan 25. doi: 10.1038/s41556-020-00627-0

PMCID:: PMC7116823

Abstract Article PDF–9.3M

Select item 69615787.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 63985018.

SOD1 activity threshold and TOR signalling modulate VAP(P58S) aggregation via reactive oxygen species-induced proteasomal degradation in a Drosophila model of amyotrophic lateral sclerosis

Kriti Chaplot, Lokesh Pimpale, Balaji Ramalingam, Senthilkumar Deivasigamani, Siddhesh S. Kamat, Girish S. Ratnaparkhi

Dis Model Mech. 2019 Feb 1; 12(2): dmm033803. Published online 2019 Feb 7. doi: 10.1242/dmm.033803

PMCID:: PMC6398501

Abstract Article

Select item 62585689.

Whole genome screen reveals a novel relationship between Wolbachia levels and Drosophila host translation

Yolande Grobler, Chi Y. Yun, David J. Kahler, Casey M. Bergman, Hangnoh Lee, Brian Oliver, Ruth Lehmann

PLoS Pathog. 2018 Nov; 14(11): e1007445. Published online 2018 Nov 13. doi: 10.1371/journal.ppat.1007445

PMCID:: PMC6258568

Abstract Article PDF–4.7M

Select item 607860410.

Human R1441C LRRK2 regulates the synaptic vesicle proteome and phosphoproteome in a Drosophila model of Parkinson’s disease

Md Shariful Islam, Hendrik Nolte, Wright Jacob, Anna B. Ziegler, Stefanie Pütz, Yael Grosjean, Karolina Szczepanowska, Aleksandra Trifunovic, Thomas Braun, Hermann Heumann, Rolf Heumann, Bernhard Hovemann, Darren J. Moore, Marcus Krüger

Hum Mol Genet. 2016 Dec 15; 25(24): 5365–5382. Published online 2016 Oct 29. doi: 10.1093/hmg/ddw352

PMCID:: PMC6078604

Abstract Article PDF–1.9M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 502578213.

Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster

Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen

Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649

PMCID:: PMC5025782

Abstract Article PDF–2.2M

Select item 486148214.

USP5 Is Dispensable for Monoubiquitin Maintenance in Drosophila

Gorica Ristic, Wei-Ling Tsou, Ermal Guzi, Adam J. Kanack, Kenneth Matthew Scaglione, Sokol V. Todi

J Biol Chem. 2016 Apr 22; 291(17): 9161–9172. Published online 2016 Feb 25. doi: 10.1074/jbc.M115.703504

PMCID:: PMC4861482

Abstract Article PDF–3.2M

Select item 476759015.

Piwi maintains germline stem cells and oogenesis in Drosophila through negative regulation of Polycomb Group proteins

Jamy C. Peng, Anton Valouev, Na Liu, Haifan Lin

Nat Genet. Author manuscript; available in PMC 2016 Jul 18.

Published in final edited form as: Nat Genet. 2016 Feb 24; 48(3): 283–291. Published online 2016 Jan 18. doi: 10.1038/ng.3486

PMCID:: PMC4767590

Abstract Article PDF–2.4M

Select item 473800516.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 452833017.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832918.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288719.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152720.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

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