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Items: 1 to 20 of 22

1.
Association of Ugrp2 gene polymorphisms with adenoid hypertrophy in the pediatric population
Mahmut Huntürk Atilla, Sibel Özdaş, Talih Özdaş, Sibel Baştimur, Sami Engin Muz, Işılay Öz, Kenan Kurt, Afife İzbirak, Mehmet Ali Babademez, Nilgün Vatandaş
Braz J Otorhinolaryngol. 2018 Sep-Oct; 84(5): 599–607. Published online 2017 Aug 1. doi: 10.1016/j.bjorl.2017.07.004
PMCID:
PMC9452243
AbstractArticlePDF–580K
2.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
3.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
4.
Applicability of HIN-1, MGMT and RASSF1A promoter methylation as biomarkers for detecting field cancerization in breast cancer
Melanie Spitzwieser, Elisabeth Holzweber, Georg Pfeiler, Stefan Hacker, Margit Cichna-Markl
Breast Cancer Res. 2015; 17(1): 125. Published online 2015 Sep 14. doi: 10.1186/s13058-015-0637-5
PMCID:
PMC4570691
AbstractArticlePDF–1.4M
5.
Notch3 Interactome Analysis Identified WWP2 as a Negative Regulator of Notch3 Signaling in Ovarian Cancer
Jin-Gyoung Jung, Alexander Stoeck, Bin Guan, Ren-Chin Wu, Heng Zhu, Seth Blackshaw, Ie-Ming Shih, Tian-Li Wang
PLoS Genet. 2014 Oct; 10(10): e1004751. Published online 2014 Oct 30. doi: 10.1371/journal.pgen.1004751
PMCID:
PMC4214668
AbstractArticlePDF–2.5M
6.
Promoter Methylation status of HIN-1 associated with outcomes of ovarian clear cell adenocarcinoma
Chih-Ming Ho, Chi-Jung Huang, Chia-Yen Huang, Yih-Yiing Wu, Shwu-Fen Chang, Wen-Fang Cheng
Mol Cancer. 2012; 11: 53. Published online 2012 Aug 8. doi: 10.1186/1476-4598-11-53
PMCID:
PMC3520826
AbstractArticlePDF–1.7M
7.
Methylation of HIN-1, RASSF1A, RIL and CDH13 in breast cancer is associated with clinical characteristics, but only RASSF1A methylation is associated with outcome
Jia Xu, Priya B Shetty, Weiwei Feng, Carol Chenault, Robert C Bast, Jr, Jean-Pierre J Issa, Susan G Hilsenbeck, Yinhua Yu
BMC Cancer. 2012; 12: 243. Published online 2012 Jun 13. doi: 10.1186/1471-2407-12-243
PMCID:
PMC3476972
AbstractArticlePDF–229K
8.
Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily
Brian C Jackson, David C Thompson, Mathew W Wright, Monica McAndrews, Alfred Bernard, Daniel W Nebert, Vasilis Vasiliou
Hum Genomics. 2011; 5(6): 691–702. Published online 2011 Oct 1. doi: 10.1186/1479-7364-5-6-691
PMCID:
PMC3251818
AbstractArticlePDF–252K
9.
The influence of one-carbon metabolism on gene promoter methylation in a population-based breast cancer study
Xinran Xu, Marilie D Gammon, Elizabeth Jefferson, Yujing Zhang, Yoon Hee Cho, James G Wetmur, Susan L Teitelbaum, Patrick T Bradshaw, Mary Beth Terry, Gail Garbowski, Hanina Hibshoosh, Alfred I Neugut, Regina M Santella, Jia Chen
Epigenetics. 2011 Nov; 6(11): 1276–1283. Published online 2011 Nov 1. doi: 10.4161/epi.6.11.17744
PMCID:
PMC3242810
AbstractArticlePDF–1.8M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
Serum estradiol levels associated with specific gene expression patterns in normal breast tissue and in breast carcinomas
Vilde D Haakensen, Trine Bjøro, Torben Lüders, Margit Riis, Ida K Bukholm, Vessela N Kristensen, Melissa A Troester, Marit M Homen, Giske Ursin, Anne-Lise Børresen-Dale, Åslaug Helland
BMC Cancer. 2011; 11: 332. Published online 2011 Aug 3. doi: 10.1186/1471-2407-11-332
PMCID:
PMC3163631
AbstractArticlePDF–345K
12.
Basal-like breast cancer displays distinct patterns of promoter methylation
Ji Shin Lee, Mary Jo Fackler, Jae Hyuk Lee, Chan Choi, Min Ho Park, Jung Han Yoon, Zhe Zhang, Saraswati Sukumar
Cancer Biol Ther. Author manuscript; available in PMC 2011 May 16.
Published in final edited form as: Cancer Biol Ther. 2010 Jun; 9(12): 1017–1024. Published online 2010 Jun 18. doi: 10.4161/cbt.9.12.11804
PMCID:
PMC3094906
AbstractArticlePDF–595K
13.
Silence of HIN-1 expression through methylation of its gene promoter in gastric cancer
Yan Gong, Ming-Zhou Guo, Zhi-Jia Ye, Xiu-Li Zhang, Yong-Liang Zhao, Yun-Sheng Yang
World J Gastroenterol. 2011 Jan 28; 17(4): 526–533. Published online 2011 Jan 28. doi: 10.3748/wjg.v17.i4.526
PMCID:
PMC3027021
AbstractArticlePDF–978K
14.
Tumor suppressor genes are frequently methylated in lymph node metastases of breast cancers
Weiwei Feng, Rosaria Orlandi, Naiqing Zhao, Maria Luisa Carcangiu, Elda Tagliabue, Jia Xu, Robert C Bast, Jr, Yinhua Yu
BMC Cancer. 2010; 10: 378. Published online 2010 Jul 20. doi: 10.1186/1471-2407-10-378
PMCID:
PMC2914707
AbstractArticlePDF–3.0M
15.
Proteomic Analysis of Human Parotid Gland Exosomes by Multidimensional Protein Identification Technology (MudPIT)
Mireya Gonzalez-Begne, Bingwen Lu, Xuemei Han, Fred K. Hagen, Arthur R. Hand, James E. Melvin, John R. Yates, III
J Proteome Res. Author manuscript; available in PMC 2010 Mar 6.
Published in final edited form as: J Proteome Res. 2009 Mar 6; 8(3): 1304–1314. doi: 10.1021/pr800658c
PMCID:
PMC2693447
AbstractArticlePDF–1.5M
16.
CpG Island Tumor Suppressor Promoter Methylation in Non-BRCA-Associated Early Mammary Carcinogenesis
Shauna N. Vasilatos, Gloria Broadwater, William T. Barry, Joseph C. Baker, Jr., Siya Lem, Eric C. Dietze, Gregory R. Bean, Andrew D. Bryson, Patrick G. Pilie, Vanessa Goldenberg, David Skaar, Carolyn Paisie, Alejandro Torres-Hernandez, Tracey L. Grant, Lee G. Wilke, Catherine Ibarra-Drendall, Julie H. Ostrander, Nicholas C. D'Amato, Carola Zalles, Randy Jirtle, Valerie M. Weaver, Victoria L. Seewaldt
Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2010 Mar 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2009 Mar; 18(3): 901–914. Published online 2009 Mar 3. doi: 10.1158/1055-9965.EPI-08-0875
PMCID:
PMC2667866
AbstractArticlePDF–1.0M
17.
Signal peptide prediction based on analysis of experimentally verified cleavage sites
Zemin Zhang, William J. Henzel
Protein Sci. 2004 Oct; 13(10): 2819–2824. doi: 10.1110/ps.04682504
PMCID:
PMC2286551
AbstractArticlePDF–125K
18.
DNA methylation profiling of ovarian carcinomas and their in vitro models identifies HOXA9, HOXB5, SCGB3A1, and CRABP1 as novel targets
Qinghua Wu, Ragnhild A Lothe, Terje Ahlquist, Ilvars Silins, Claes G Tropé, Francesca Micci, Jahn M Nesland, Zhenhe Suo, Guro E Lind
Mol Cancer. 2007; 6: 45. Published online 2007 Jul 10. doi: 10.1186/1476-4598-6-45
PMCID:
PMC1964763
AbstractArticlePDF–1.1M
19.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
20.
The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment
Hilary F. Clark, Austin L. Gurney, Evangeline Abaya, Kevin Baker, Daryl Baldwin, Jennifer Brush, Jian Chen, Bernard Chow, Clarissa Chui, Craig Crowley, Bridget Currell, Bethanne Deuel, Patrick Dowd, Dan Eaton, Jessica Foster, Christopher Grimaldi, Qimin Gu, Philip E. Hass, Sherry Heldens, Arthur Huang, Hok Seon Kim, Laura Klimowski, Yisheng Jin, Stephanie Johnson, James Lee, Lhney Lewis, Dongzhou Liao, Melanie Mark, Edward Robbie, Celina Sanchez, Jill Schoenfeld, Somasekar Seshagiri, Laura Simmons, Jennifer Singh, Victoria Smith, Jeremy Stinson, Alicia Vagts, Richard Vandlen, Colin Watanabe, David Wieand, Kathryn Woods, Ming-Hong Xie, Daniel Yansura, Sothy Yi, Guoying Yu, Jean Yuan, Min Zhang, Zemin Zhang, Audrey Goddard, William I. Wood, Paul Godowski
Genome Res. 2003 Oct; 13(10): 2265–2270. doi: 10.1101/gr.1293003
Correction in:
Genome Res. 2003 Dec; 13(12): 2759.
PMCID:
PMC403697
AbstractArticlePDF–120K

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