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Items: 1 to 20 of 32

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Cnm1 mediates nucleus–mitochondria contact site formation in response to phospholipid levels
Michal Eisenberg-Bord, Naama Zung, Javier Collado, Layla Drwesh, Emma J. Fenech, Amir Fadel, Nili Dezorella, Yury S. Bykov, Doron Rapaport, Ruben Fernandez-Busnadiego, Maya Schuldiner
J Cell Biol. 2021 Nov 1; 220(11): e202104100. Published online 2021 Oct 25. doi: 10.1083/jcb.202104100
PMCID:
PMC8548916
AbstractArticlePDF–6.5M
4.
Diphthamide promotes TOR signaling by increasing the translation of proteins in the TORC1 pathway
Yugang Zhang, Zhewang Lin, Julia Zhu, Miao Wang, Hening Lin
Proc Natl Acad Sci U S A. 2021 Sep 14; 118(37): e2104577118. Published online 2021 Sep 10. doi: 10.1073/pnas.2104577118
PMCID:
PMC8449394
AbstractArticlePDF–1.0M
5.
Dph3 Enables Aerobic Diphthamide Biosynthesis by Donating One Iron Atom to Transform a [3Fe–4S] to a [4Fe–4S] Cluster in Dph1–Dph2
Yugang Zhang, Dan Su, Boris Dzikovski, Sean H. Majer, Rachael Coleman, Siddarth Chandrasekaran, Michael K. Fenwick, Brian R. Crane, Kyle M. Lancaster, Jack H. Freed, Hening Lin
J Am Chem Soc. 2021 Jun 30; 143(25): 9314–9319. Published online 2021 Jun 22. doi: 10.1021/jacs.1c03956
PMCID:
PMC8251694
AbstractArticlePDF–1.7M
6.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
7.
Importance of diphthamide modified EF2 for translational accuracy and competitive cell growth in yeast
Harmen Hawer, Koray Ütkür, Meike Arend, Klaus Mayer, Lorenz Adrian, Ulrich Brinkmann, Raffael Schaffrath
PLoS One. 2018; 13(10): e0205870. Published online 2018 Oct 18. doi: 10.1371/journal.pone.0205870
PMCID:
PMC6193676
AbstractArticlePDF–2.7M
8.
Transcriptome-wide analysis of roles for tRNA modifications in translational regulation
Hsin-Jung Chou, Elisa Donnard, H. Tobias Gustafsson, Manuel Garber, Oliver J. Rando
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 978–992.e4. Published online 2017 Nov 30. doi: 10.1016/j.molcel.2017.11.002
PMCID:
PMC5728682
AbstractArticlePDF–3.0M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
A systematic genetic screen for genes involved in sensing inorganic phosphate availability in Saccharomyces cerevisiae
Joonhyuk Choi, Abbhirami Rajagopal, Yi-Fan Xu, Joshua D. Rabinowitz, Erin K. O’Shea
PLoS One. 2017; 12(5): e0176085. Published online 2017 May 17. doi: 10.1371/journal.pone.0176085
PMCID:
PMC5435139
AbstractArticlePDF–1.9M
11.
Cbr1 is a Dph3 reductase required for the tRNA wobble uridine modification
Zhewang Lin, Min Dong, Yugang Zhang, Eunyoung Alisa Lee, Hening Lin
Nat Chem Biol. Author manuscript; available in PMC 2017 Apr 3.
Published in final edited form as: Nat Chem Biol. 2016 Dec; 12(12): 995–997. Published online 2016 Oct 3. doi: 10.1038/nchembio.2190
PMCID:
PMC5110365
AbstractArticlePDF–676K
12.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
13.
Yeast Elongator protein Elp1p does not undergo proteolytic processing in exponentially growing cells
Hao Xu, Joakim Bygdell, Gunnar Wingsle, Anders S. Byström
Microbiologyopen. 2015 Dec; 4(6): 867–878. Published online 2015 Sep 25. doi: 10.1002/mbo3.285
PMCID:
PMC4694139
AbstractArticlePDF–316K
14.
Dph3 Is an Electron Donor for Dph1-Dph2 in the First Step of Eukaryotic Diphthamide Biosynthesis
Min Dong, Xiaoyang Su, Boris Dzikovski, Emily E. Dando, Xuling Zhu, Jintang Du, Jack H. Freed, Hening Lin
J Am Chem Soc. 2014 Feb 5; 136(5): 1754–1757. Published online 2014 Jan 14. doi: 10.1021/ja4118957
PMCID:
PMC3985478
AbstractArticlePDF–1.9M
15.
Whi3, an S. cerevisiae RNA-Binding Protein, Is a Component of Stress Granules That Regulates Levels of Its Target mRNAs
Kristen J. Holmes, Daniel M. Klass, Evan L. Guiney, Martha S. Cyert
PLoS One. 2013; 8(12): e84060. Published online 2013 Dec 27. doi: 10.1371/journal.pone.0084060
PMCID:
PMC3873981
AbstractArticlePDF–11M
16.
Insights into Diphthamide, Key Diphtheria Toxin Effector
Wael Abdel-Fattah, Viktor Scheidt, Shanow Uthman, Michael J. R. Stark, Raffael Schaffrath
Toxins (Basel) 2013 May; 5(5): 958–968. Published online 2013 May 3. doi: 10.3390/toxins5050958
PMCID:
PMC3709272
AbstractArticlePDF–1001K
17.
Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast
Min-Kyung Sung, Gyubum Lim, Dae-Gwan Yi, Yeon Ji Chang, Eun Bin Yang, KiYoung Lee, Won-Ki Huh
Genome Res. 2013 Apr; 23(4): 736–746. doi: 10.1101/gr.148346.112
PMCID:
PMC3613590
AbstractArticlePDF–1.7M
18.
The Amidation Step of Diphthamide Biosynthesis in Yeast Requires DPH6, a Gene Identified through Mining the DPH1-DPH5 Interaction Network
Shanow Uthman, Christian Bär, Viktor Scheidt, Shihui Liu, Sara ten Have, Flaviano Giorgini, Michael J. R. Stark, Raffael Schaffrath
PLoS Genet. 2013 Feb; 9(2): e1003334. Published online 2013 Feb 28. doi: 10.1371/journal.pgen.1003334
PMCID:
PMC3585130
AbstractArticlePDF–1.9M
19.
YBR246W is required for the third step of diphthamide biosynthesis
Xiaoyang Su, Wei Chen, Wankyu Lee, Hong Jiang, Sheng Zhang, Hening Lin
J Am Chem Soc. Author manuscript; available in PMC 2013 Jan 18.
Published in final edited form as: J Am Chem Soc. 2012 Jan 18; 134(2): 773–776. Published online 2011 Dec 21. doi: 10.1021/ja208870a
PMCID:
PMC3264676
AbstractArticlePDF–1.1M
20.
Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins
Tanja Scherrer, Christian Femmer, Ralph Schiess, Ruedi Aebersold, André P Gerber
Genome Biol. 2011; 12(1): R3. Published online 2011 Jan 13. doi: 10.1186/gb-2011-12-1-r3
PMCID:
PMC3091301
AbstractArticlePDF–1.3M

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