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Items: 1 to 20 of 90

1.
Histone variant H2A.Z is needed for efficient transcription-coupled NER and genome integrity in UV challenged yeast cells
Hélène Gaillard, Toni Ciudad, Andrés Aguilera, Ralf E. Wellinger
PLoS Genet. 2024 Sep; 20(9): e1011300. Published online 2024 Sep 10. doi: 10.1371/journal.pgen.1011300
PMCID:
PMC11414981
AbstractArticlePDF–2.9M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
The ASCC2 CUE domain in the ALKBH3–ASCC DNA repair complex recognizes adjacent ubiquitins in K63-linked polyubiquitin
Patrick M. Lombardi, Sara Haile, Timur Rusanov, Rebecca Rodell, Rita Anoh, Julia G. Baer, Kate A. Burke, Lauren N. Gray, Abigail R. Hacker, Kayla R. Kebreau, Christine K. Ngandu, Hannah A. Orland, Emmanuella Osei-Asante, Dhane P. Schmelyun, Devin E. Shorb, Shaheer H. Syed, Julianna M. Veilleux, Ananya Majumdar, Nima Mosammaparast, Cynthia Wolberger
J Biol Chem. 2022 Feb; 298(2): 101545. Published online 2021 Dec 28. doi: 10.1016/j.jbc.2021.101545
PMCID:
PMC8800115
AbstractArticlePDF–3.6M
7.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
8.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
9.
Effects of chain length and geometry on the activation of DNA damage bypass by polyubiquitylated PCNA
Diane T Takahashi, Hans-Peter Wollscheid, Jonathan Lowther, Helle D Ulrich
Nucleic Acids Res. 2020 Apr 6; 48(6): 3042–3052. Published online 2020 Feb 3. doi: 10.1093/nar/gkaa053
Correction in:
Nucleic Acids Res. 2022 Jul 8; 50(12): 7197.
PMCID:
PMC7102961
AbstractArticlePDF–1.0M
10.
iDamage: a method to integrate modified DNA into the yeast genome
Katarzyna H Masłowska, Luisa Laureti, Vincent Pagès
Nucleic Acids Res. 2019 Nov 18; 47(20): e124. Published online 2019 Aug 16. doi: 10.1093/nar/gkz723
PMCID:
PMC6846816
AbstractArticlePDF–619K
11.
The Xanthomonas citri effector protein PthA interacts with citrus proteins involved in nuclear transport, protein folding and ubiquitination associated with DNA repair
MARIANE NORONHA DOMINGUES, TIAGO ANTONIO DE SOUZA, RAÚL ANDRÉS CERNADAS, MARIA LUIZA PEIXOTO DE OLIVEIRA, CÁSSIA DOCENA, CHUCK SHAKER FARAH, CELSO EDUARDO BENEDETTI
Mol Plant Pathol. 2010 Sep; 11(5): 663–675. Published online 2010 Jun 9. doi: 10.1111/j.1364-3703.2010.00636.x
PMCID:
PMC6640223
AbstractArticlePDF–932K
12.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
13.
The helicase Pif1 functions in the template switching pathway of DNA damage bypass
Néstor García-Rodríguez, Ronald P Wong, Helle D Ulrich
Nucleic Acids Res. 2018 Sep 19; 46(16): 8347–8356. Published online 2018 Aug 10. doi: 10.1093/nar/gky648
PMCID:
PMC6144865
AbstractArticlePDF–7.3M
14.
A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A
Sultan Ciftci-Yilmaz, Wei-Chun Au, Prashant K. Mishra, Jessica R. Eisenstatt, Joy Chang, Anthony R. Dawson, Iris Zhu, Mahfuzur Rahman, Sven Bilke, Michael Costanzo, Anastasia Baryshnikova, Chad L. Myers, Paul S. Meltzer, David Landsman, Richard E. Baker, Charles Boone, Munira A. Basrai
Genetics. 2018 Sep; 210(1): 203–218. Published online 2018 Jul 16. doi: 10.1534/genetics.118.301305
PMCID:
PMC6116949
AbstractArticlePDF–2.1M
15.
Proteasome Activity Is Influenced by the HECT_2 Protein Ipa1 in Budding Yeast
Anne P. Lutz, Sarah Schladebeck, Christian Renicke, Roberta Spadaccini, Hans-Ulrich Mösch, Christof Taxis
Genetics. 2018 May; 209(1): 157–171. Published online 2018 Mar 8. doi: 10.1534/genetics.118.300744
PMCID:
PMC5937183
AbstractArticlePDF–2.1M
16.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
17.
Exploring Quantitative Yeast Phenomics with Single Cell Analysis of DNA Damage Foci
Erin B. Styles, Karen J. Founk, Lee A. Zamparo, Tina L. Sing, Dogus Altintas, Cyril Ribeyre, Virginie Ribaud, Jacques Rougemont, David Mayhew, Michael Costanzo, Matej Usaj, Adrian J. Verster, Elizabeth N. Koch, Daniele Novarina, Marco Graf, Brian Luke, Marco Muzi-Falconi, Chad L. Myers, Robi David Mitra, David Shore, Grant W. Brown, Zhaolei Zhang, Charles Boone, Brenda J. Andrews
Cell Syst. Author manuscript; available in PMC 2017 Nov 16.
Published in final edited form as: Cell Syst. 2016 Sep 28; 3(3): 264–277.e10. Published online 2016 Sep 8. doi: 10.1016/j.cels.2016.08.008
PMCID:
PMC5689480
AbstractArticlePDF–2.9M
18.
RNF8/UBC13 ubiquitin signaling suppresses synapse formation in the mammalian brain
Pamela Valnegri, Ju Huang, Tomoko Yamada, Yue Yang, Luis A. Mejia, Ha Y. Cho, Anna Oldenborg, Azad Bonni
Nat Commun. 2017; 8: 1271. Published online 2017 Nov 2. doi: 10.1038/s41467-017-01333-6
PMCID:
PMC5668370
AbstractArticlePDF–2.2M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
Avoidance of APOBEC3B-induced mutation by error-free lesion bypass
James I. Hoopes, Amber L. Hughes, Lauren A. Hobson, Luis M. Cortez, Alexander J. Brown, Steven A. Roberts
Nucleic Acids Res. 2017 May 19; 45(9): 5243–5254. Published online 2017 Mar 10. doi: 10.1093/nar/gkx169
PMCID:
PMC5605239
AbstractArticlePDF–962K

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