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Items: 1 to 20 of 30

1.
Saccharomyces cerevisiae DJ-1 paralogs maintain genome integrity through glycation repair of nucleic acids and proteins
Gautam Susarla, Priyanka Kataria, Amrita Kundu, Patrick D'Silva
eLife. 2023; 12: e88875. Published online 2023 Aug 7. doi: 10.7554/eLife.88875
PMCID:
PMC10431920
AbstractArticlePDF–5.1M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
5.
Redox-dependent regulation of mitochondrial dynamics by DJ-1 paralogs in Saccharomyces cerevisiae
Kondalarao Bankapalli, Vinaya Vishwanathan, Gautam Susarla, Ningaraju Sunayana, SreeDivya Saladi, Divya Peethambaram, Patrick D'Silva
Redox Biol. 2020 May; 32: 101451. Published online 2020 Feb 7. doi: 10.1016/j.redox.2020.101451
PMCID:
PMC7026286
AbstractArticlePDF–3.0M
6.
Oxidative stress triggers aggregation of GFP-tagged Hsp31p, the budding yeast environmental stress response chaperone, and glyoxalase III
Urszula Natkańska, Adrianna Skoneczna, Marek Skoneczny
Cell Stress Chaperones. 2018 Jul; 23(4): 595–607. Published online 2017 Dec 20. doi: 10.1007/s12192-017-0868-8
PMCID:
PMC6045530
AbstractArticlePDF–4.3M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
10.
The small heat shock protein Hsp31 cooperates with Hsp104 to modulate Sup35 prion aggregation
Kiran Aslam, Chai-jui Tsai, Tony R. Hazbun
Prion. 2016; 10(6): 444–465. Published online 2016 Oct 3. doi: 10.1080/19336896.2016.1234574
PMCID:
PMC5161301
AbstractArticlePDF–1015K
11.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
12.
Hsp31, a member of the DJ-1 superfamily, is a multitasking stress responder with chaperone activity
Kiran Aslam, Tony R. Hazbun
Prion. 2016 Mar-Apr; 10(2): 103–111. Published online 2016 Apr 20. doi: 10.1080/19336896.2016.1141858
PMCID:
PMC4981205
AbstractArticlePDF–363K
13.
ATPase modulated stress granules contain a diverse proteome and substructure
Saumya Jain, Joshua R. Wheeler, Robert W. Walters, Anurag Agrawal, Anthony Barsic, Roy Parker
Cell. Author manuscript; available in PMC 2017 Jan 28.
Published in final edited form as: Cell. 2016 Jan 28; 164(3): 487–498. Published online 2016 Jan 14. doi: 10.1016/j.cell.2015.12.038
PMCID:
PMC4733397
AbstractArticlePDF–2.2M
14.
Robust Glyoxalase activity of Hsp31, a ThiJ/DJ-1/PfpI Family Member Protein, Is Critical for Oxidative Stress Resistance in Saccharomyces cerevisiae
Kondalarao Bankapalli, SreeDivya Saladi, Sahezeel S. Awadia, Arvind Vittal Goswami, Madhuja Samaddar, Patrick D'Silva
J Biol Chem. 2015 Oct 30; 290(44): 26491–26507. Published online 2015 Sep 14. doi: 10.1074/jbc.M115.673624
PMCID:
PMC4646309
AbstractArticlePDF–3.5M
15.
Absence of the Yeast Hsp31 Chaperones of the DJ-1 Superfamily Perturbs Cytoplasmic Protein Quality Control in Late Growth Phase
Ingo Amm, Derrick Norell, Dieter H. Wolf
PLoS One. 2015; 10(10): e0140363. Published online 2015 Oct 14. doi: 10.1371/journal.pone.0140363
PMCID:
PMC4605529
AbstractArticlePDF–2.2M
16.
Hsp31 Is a Stress Response Chaperone That Intervenes in the Protein Misfolding Process
Chai-jui Tsai, Kiran Aslam, Holli M. Drendel, Josephat M. Asiago, Kourtney M. Goode, Lake N. Paul, Jean-Christophe Rochet, Tony R. Hazbun
J Biol Chem. 2015 Oct 9; 290(41): 24816–24834. Published online 2015 Aug 25. doi: 10.1074/jbc.M115.678367
PMCID:
PMC4598993
AbstractArticlePDF–2.7M
17.
Yeast DJ-1 superfamily members are required for diauxic-shift reprogramming and cell survival in stationary phase
Leonor Miller-Fleming, Pedro Antas, Teresa Faria Pais, Joshua L. Smalley, Flaviano Giorgini, Tiago Fleming Outeiro
Proc Natl Acad Sci U S A. 2014 May 13; 111(19): 7012–7017. Published online 2014 Apr 2. doi: 10.1073/pnas.1319221111
PMCID:
PMC4024926
AbstractArticlePDF–1.1M
18.
A Glutathione-independent Glyoxalase of the DJ-1 Superfamily Plays an Important Role in Managing Metabolically Generated Methylglyoxal in Candida albicans
Sahar Hasim, Nur Ahmad Hussin, Fadhel Alomar, Keshore R. Bidasee, Kenneth W. Nickerson, Mark A. Wilson
J Biol Chem. 2014 Jan 17; 289(3): 1662–1674. Published online 2013 Dec 3. doi: 10.1074/jbc.M113.505784
PMCID:
PMC3894345
AbstractArticlePDF–2.3M
19.
Quantitative analysis of chaperone network throughput in budding yeast
Philip Brownridge, Craig Lawless, Aishwarya B Payapilly, Karin Lanthaler, Stephen W Holman, Victoria M Harman, Christopher M Grant, Robert J Beynon, Simon J Hubbard
Proteomics. 2013 Apr; 13(8): 1276–1291. Published online 2013 Mar 15. doi: 10.1002/pmic.201200412
PMCID:
PMC3791555
AbstractArticlePDF–1.0M
20.
Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast
Min-Kyung Sung, Gyubum Lim, Dae-Gwan Yi, Yeon Ji Chang, Eun Bin Yang, KiYoung Lee, Won-Ki Huh
Genome Res. 2013 Apr; 23(4): 736–746. doi: 10.1101/gr.148346.112
PMCID:
PMC3613590
AbstractArticlePDF–1.7M

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