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Items: 1 to 20 of 55

1.
The polySUMOylation axis promotes nucleolar release of Tof2 for mitotic exit
Emily Gutierrez-Morton, Cory Haluska, Liam Collins, Raed Rizkallah, Robert J. Tomko, Jr., Yanchang Wang
Cell Rep. Author manuscript; available in PMC 2024 Aug 4.
Published in final edited form as: Cell Rep. 2024 Jul 23; 43(7): 114492. Published online 2024 Jul 13. doi: 10.1016/j.celrep.2024.114492
PMCID:
PMC11298248
AbstractArticlePDF–2.5M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Ctf3/CENP-I provides a docking site for the desumoylase Ulp2 at the kinetochore
Yun Quan, Stephen M. Hinshaw, Pang-Che Wang, Stephen C. Harrison, Huilin Zhou
J Cell Biol. 2021 Aug 2; 220(8): e202012149. Published online 2021 Jun 3. doi: 10.1083/jcb.202012149
PMCID:
PMC8178754
AbstractArticlePDF–3.9M
7.
Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction
Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon
Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012
PMCID:
PMC7758880
AbstractArticle
8.
Histone sumoylation promotes Set3 histone-deacetylase complex-mediated transcriptional regulation
Hong-Yeoul Ryu, Dejian Zhao, Jianhui Li, Dan Su, Mark Hochstrasser
Nucleic Acids Res. 2020 Dec 2; 48(21): 12151–12168. Published online 2020 Nov 24. doi: 10.1093/nar/gkaa1093
PMCID:
PMC7708062
AbstractArticlePDF–4.1M
9.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.9M
10.
Recruitment of the Ulp2 protease to the inner kinetochore prevents its hyper-sumoylation to ensure accurate chromosome segregation
Raymond T. Suhandynata, Yun Quan, Yusheng Yang, Wei-Tsung Yuan, Claudio P. Albuquerque, Huilin Zhou
PLoS Genet. 2019 Nov; 15(11): e1008477. Published online 2019 Nov 20. doi: 10.1371/journal.pgen.1008477
PMCID:
PMC6892545
AbstractArticlePDF–3.6M
11.
SUMO-Chain-Regulated Proteasomal Degradation Timing Exemplified in DNA Replication Initiation
Ivan Psakhye, Federica Castellucci, Dana Branzei
Mol Cell. 2019 Nov 21; 76(4): 632–645.e6. doi: 10.1016/j.molcel.2019.08.003
PMCID:
PMC6891891
AbstractArticle
12.
Siz2 Prevents Ribosomal DNA Recombination by Modulating Levels of Tof2 in Saccharomyces cerevisiae
Neethu Maria Abraham, Kathirvel Ramalingam, Saketh Murthy, Krishnaveni Mishra
mSphere. 2019 Nov-Dec; 4(6): e00713-19. Published online 2019 Nov 27. doi: 10.1128/mSphere.00713-19
PMCID:
PMC6881720
AbstractArticlePDF–1.2M
13.
The Ulp2 SUMO protease promotes transcription elongation through regulation of histone sumoylation
Hong‐Yeoul Ryu, Dan Su, Nicole R Wilson‐Eisele, Dejian Zhao, Francesc López‐Giráldez, Mark Hochstrasser
EMBO J. 2019 Aug 15; 38(16): e102003. Published online 2019 Jul 17. doi: 10.15252/embj.2019102003
PMCID:
PMC6694223
AbstractArticlePDF–1.8M
14.
Distinct adaptive mechanisms drive recovery from aneuploidy caused by loss of the Ulp2 SUMO protease
Hong-Yeoul Ryu, Francesc López-Giráldez, James Knight, Soo Seok Hwang, Christina Renner, Stefan G. Kreft, Mark Hochstrasser
Nat Commun. 2018; 9: 5417. Published online 2018 Dec 21. doi: 10.1038/s41467-018-07836-0
PMCID:
PMC6303320
AbstractArticlePDF–3.3M
15.
Defective RNA polymerase III is negatively regulated by the SUMO-Ubiquitin-Cdc48 pathway
Zheng Wang, Catherine Wu, Aaron Aslanian, John R Yates, III, Tony Hunter
eLife. 2018; 7: e35447. Published online 2018 Sep 7. doi: 10.7554/eLife.35447
PMCID:
PMC6128692
AbstractArticlePDF–6.9M
16.
Binding to small ubiquitin-like modifier and the nucleolar protein Csm1 regulates substrate specificity of the Ulp2 protease
Claudio Ponte de Albuquerque, Raymond T. Suhandynata, Christopher R. Carlson, Wei-Tsung Yuan, Huilin Zhou
J Biol Chem. 2018 Aug 3; 293(31): 12105–12119. Published online 2018 Jun 14. doi: 10.1074/jbc.RA118.003022
PMCID:
PMC6078457
AbstractArticlePDF–2.4M
17.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
18.
Exploring Genetic Suppression Interactions on a Global Scale
Jolanda van Leeuwen, Carles Pons, Joseph C. Mellor, Takafumi N. Yamaguchi, Helena Friesen, John Koschwanez, Mojca Mattiazzi Ušaj, Maria Pechlaner, Mehmet Takar, Matej Ušaj, Benjamin VanderSluis, Kerry Andrusiak, Pritpal Bansal, Anastasia Baryshnikova, Claire Boone, Jessica Cao, Atina Cote, Marinella Gebbia, Gene Horecka, Ira Horecka, Elena Kuzmin, Nicole Legro, Wendy Liang, Natascha van Lieshout, Margaret McNee, Bryan-Joseph San Luis, Fatemeh Shaeri, Ermira Shuteriqi, Song Sun, Lu Yang, Ji-Young Youn, Michael Yuen, Michael Costanzo, Anne-Claude Gingras, Patrick Aloy, Chris Oostenbrink, Andrew Murray, Todd R. Graham, Chad L. Myers, Brenda J. Andrews, Frederick P. Roth, Charles Boone
Science. Author manuscript; available in PMC 2017 Aug 19.
Published in final edited form as: Science. 2016 Nov 4; 354(6312): aag0839. doi: 10.1126/science.aag0839
PMCID:
PMC5562937
AbstractArticlePDF–2.5M
19.
A Lysine Desert Protects a Novel Domain in the Slx5-Slx8 SUMO Targeted Ub Ligase To Maintain Sumoylation Levels in Saccharomyces cerevisiae
Pragati Sharma, Janet R. Mullen, Minxing Li, Mikel Zaratiegui, Samuel F. Bunting, Steven J. Brill
Genetics. 2017 Aug; 206(4): 1807–1821. Published online 2017 May 26. doi: 10.1534/genetics.117.202697
PMCID:
PMC5560789
AbstractArticlePDF–1.7M
20.
Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity
Jason Liang, Namit Singh, Christopher R. Carlson, Claudio P. Albuquerque, Kevin D. Corbett, Huilin Zhou
Genes Dev. 2017 Apr 15; 31(8): 802–815. doi: 10.1101/gad.296145.117
PMCID:
PMC5435892
AbstractArticlePDF–729K

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