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Select item 115737891.

Accurate and sensitive interactome profiling using a quantitative protein-fragment complementation assay

Natalia Lazarewicz, Gaëlle Le Dez, Romina Cerjani, Lunelys Runeshaw, Matthias Meurer, Michael Knop, Robert Wysocki, Gwenaël Rabut

Cell Rep Methods. 2024 Oct 21; 4(10): 100880. Published online 2024 Oct 21. doi: 10.1016/j.crmeth.2024.100880

PMCID:: PMC11573789

Abstract Article PDF–4.0M

Select item 114236782.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 111099583.

Defective transfer of parental histone decreases frequency of homologous recombination by increasing free histone pools in budding yeast

Srinivasu Karri, Yi Yang, Jiaqi Zhou, Quinn Dickinson, Jing Jia, Yuxin Huang, Zhiquan Wang, Haiyun Gan, Chuanhe Yu

Nucleic Acids Res. 2024 May 22; 52(9): 5138–5151. Published online 2024 Mar 30. doi: 10.1093/nar/gkae205

PMCID:: PMC11109958

Abstract Article PDF–1.8M

Select item 108724774.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001385.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105857366.

Analyses of POL30 (PCNA) reveal positional effects in transient repression or bi-modal active/silent state at the sub-telomeres of S. cerevisiae

Safia Mahabub Sauty, Krassimir Yankulov

Epigenetics Chromatin. 2023; 16: 40. Published online 2023 Oct 19. doi: 10.1186/s13072-023-00513-7

PMCID:: PMC10585736

Abstract Article PDF–7.0M

Select item 98643997.

DBP7 and YRF1-6 Are Involved in Cell Sensitivity to LiCl by Regulating the Translation of PGM2 mRNA

Sasi Kumar Jagadeesan, Mustafa Al-gafari, Jiashu Wang, Sarah Takallou, Danielle Allard, Maryam Hajikarimlou, Thomas David Daniel Kazmirchuk, Houman Moteshareie, Kamaledin B. Said, Reza Nokhbeh, Myron Smith, Bahram Samanfar, Ashkan Golshani

Int J Mol Sci. 2023 Jan; 24(2): 1785. Published online 2023 Jan 16. doi: 10.3390/ijms24021785

PMCID:: PMC9864399

Abstract Article PDF–3.4M

Select item 96380288.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 92860239.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 920981110.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 891002911.

Nst1, Densely Associated to P-Body in the Post-Exponential Phases of Saccharomyces cerevisiae, Shows an Intrinsic Potential of Producing Liquid-Like Condensates of P-Body Components in Cells

Yoon-Jeong Choi, Kiwon Song

Int J Mol Sci. 2022 Mar; 23(5): 2501. Published online 2022 Feb 24. doi: 10.3390/ijms23052501

PMCID:: PMC8910029

Abstract Article PDF–3.5M

Select item 866360712.

The Ccr4-Not complex monitors the translating ribosome for codon optimality

Robert Buschauer, Yoshitaka Matsuo, Takato Sugiyama, Ying-Hsin Chen, Najwa Alhusaini, Thomas Sweet, Ken Ikeuchi, Jingdong Cheng, Yasuko Matsuki, Risa Nobuta, Andrea Gilmozzi, Otto Berninghausen, Petr Tesina, Thomas Becker, Jeff Coller, Toshifumi Inada, Roland Beckmann

Science. Author manuscript; available in PMC 2021 Dec 10.

Published in final edited form as: Science. 2020 Apr 17; 368(6488): eaay6912. doi: 10.1126/science.aay6912

PMCID:: PMC8663607

Abstract Article PDF–3.1M

Select item 855165413.

Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters

Madhura Bhagwat, Shreya Nagar, Pritpal Kaur, Riddhi Mehta, Ivana Vancurova, Ales Vancura

J Biol Chem. 2021 Nov; 297(5): 101246. Published online 2021 Sep 25. doi: 10.1016/j.jbc.2021.101246

PMCID:: PMC8551654

Abstract Article PDF–3.5M

Select item 854891614.

Cnm1 mediates nucleus–mitochondria contact site formation in response to phospholipid levels

Michal Eisenberg-Bord, Naama Zung, Javier Collado, Layla Drwesh, Emma J. Fenech, Amir Fadel, Nili Dezorella, Yury S. Bykov, Doron Rapaport, Ruben Fernandez-Busnadiego, Maya Schuldiner

J Cell Biol. 2021 Nov 1; 220(11): e202104100. Published online 2021 Oct 25. doi: 10.1083/jcb.202104100

PMCID:: PMC8548916

Abstract Article PDF–6.5M

Select item 835352615.

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription

David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz

J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051

PMCID:: PMC8353526

Abstract Article

Select item 796248916.

Alternative RNA degradation pathways by the exonuclease Pop2p from Saccharomyces cerevisiae

Xuan Ye, Armend Axhemi, Eckhard Jankowsky

RNA. 2021 Apr; 27(4): 465–476. doi: 10.1261/rna.078006.120

PMCID:: PMC7962489

Abstract Article PDF–2.9M

Select item 782259417.

Cross-compartment signal propagation in the mitotic exit network

Xiaoxue Zhou, Wenxue Li, Yansheng Liu, Angelika Amon

eLife. 2021; 10: e63645. Published online 2021 Jan 22. doi: 10.7554/eLife.63645

PMCID:: PMC7822594

Abstract Article PDF–4.3M

Select item 774630818.

CAF-1 and Rtt101p function within the replication-coupled chromatin assembly network to promote H4 K16ac, preventing ectopic silencing

Tiffany J. Young, Yi Cui, Claire Pfeffer, Emilie Hobbs, Wenjie Liu, Joseph Irudayaraj, Ann L. Kirchmaier

PLoS Genet. 2020 Dec; 16(12): e1009226. Published online 2020 Dec 7. doi: 10.1371/journal.pgen.1009226

PMCID:: PMC7746308

Abstract Article PDF–3.2M

Select item 694080419.

Translational Regulation of Pmt1 and Pmt2 by Bfr1 Affects Unfolded Protein O-Mannosylation

Joan Castells-Ballester, Natalie Rinis, Ilgin Kotan, Lihi Gal, Daniela Bausewein, Ilia Kats, Ewa Zatorska, Günter Kramer, Bernd Bukau, Maya Schuldiner, Sabine Strahl

Int J Mol Sci. 2019 Dec; 20(24): 6220. Published online 2019 Dec 10. doi: 10.3390/ijms20246220