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Items: 1 to 20 of 32

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Genes and lipids that impact uptake and assimilation of exogenous coenzyme Q in Saccharomyces cerevisiae
Lucía Fernández-del-Río, Miranda Kelly, Jaime Contreras, Michelle C. Bradley, Andrew M. James, Michael P. Murphy, Gregory S. Payne, Catherine F. Clarke
Free Radic Biol Med. Author manuscript; available in PMC 2021 Jul 19.
Published in final edited form as: Free Radic Biol Med. 2020 Jul 1; 154: 105–118. Published online 2020 May 6. doi: 10.1016/j.freeradbiomed.2020.04.029
PMCID:
PMC7611304
AbstractArticlePDF–2.0M
6.
The yeast protein Ubx4p contributes to mitochondrial respiration and lithium–galactose–mediated activation of the unfolded protein response
Evandro A. De-Souza, Felipe S. A. Pimentel, Ana Luiza F. V. De-Queiroz, Henrique Camara, Mikaella L. Felix-Formiga, Caio M. Machado, Silas Pinto, Antonio Galina, Marcelo A. Mori, Monica Montero-Lomeli, Claudio A. Masuda
J Biol Chem. 2020 Mar 20; 295(12): 3773–3782. Published online 2020 Jan 29. doi: 10.1074/jbc.RA119.011271
PMCID:
PMC7086034
AbstractArticlePDF–1.2M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase
Xiao Guo, Natalie M. Niemi, Joshua J. Coon, David J. Pagliarini
J Biol Chem. 2017 Jul 14; 292(28): 11751–11759. Published online 2017 May 24. doi: 10.1074/jbc.M117.787341
PMCID:
PMC5512070
AbstractArticlePDF–2.1M
9.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
10.
AarF Domain Containing Kinase 3 (ADCK3) Mutant Cells Display Signs of Oxidative Stress, Defects in Mitochondrial Homeostasis and Lysosomal Accumulation
Jason K. Cullen, Norazian Abdul Murad, Abrey Yeo, Matthew McKenzie, Micheal Ward, Kok Leong Chong, Nicole L. Schieber, Robert G. Parton, Yi Chieh Lim, Ernst Wolvetang, Ghassan J. Maghzal, Roland Stocker, Martin F. Lavin
PLoS One. 2016; 11(2): e0148213. Published online 2016 Feb 11. doi: 10.1371/journal.pone.0148213
Correction in:
PLoS One. 2016; 11(7): e0160162.
PMCID:
PMC4751082
AbstractArticlePDF–8.2M
11.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
12.
Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes
Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker
J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017
PMCID:
PMC4416864
AbstractArticlePDF–3.4M
13.
Identification of Coq11, a New Coenzyme Q Biosynthetic Protein in the CoQ-Synthome in Saccharomyces cerevisiae
Christopher M. Allan, Agape M. Awad, Jarrett S. Johnson, Dyna I. Shirasaki, Charles Wang, Crysten E. Blaby-Haas, Sabeeha S. Merchant, Joseph A. Loo, Catherine F. Clarke
J Biol Chem. 2015 Mar 20; 290(12): 7517–7534. Published online 2015 Jan 28. doi: 10.1074/jbc.M114.633131
PMCID:
PMC4367260
AbstractArticlePDF–5.7M
14.
Coenzyme Q supplementation or over-expression of the yeast Coq8 putative kinase stabilizes multi-subunit Coq polypeptide complexes in yeast coq null mutants
Cuiwen H. He, Letian X. Xie, Christopher M. Allan, UyenPhuong C. Tran, Catherine F. Clarke
Biochim Biophys Acta. Author manuscript; available in PMC 2015 Apr 4.
Published in final edited form as: Biochim Biophys Acta. 2014 Apr 4; 1841(4): 630–644. Published online 2014 Jan 7. doi: 10.1016/j.bbalip.2013.12.017
PMCID:
PMC3959571
AbstractArticlePDF–4.4M
15.
A Conserved START Domain Coenzyme Q-binding Polypeptide is Required for Efficient Q Biosynthesis, Respiratory Electron Transport, and Antioxidant Function in Saccharomyces cerevisiae
Christopher M. Allan, Shauna Hill, Susan Morvaridi, Ryoichi Saiki, Jarrett S. Johnson, Wei-Siang Liau, Kathleen Hirano, Tadashi Kawashima, Ziming Ji, Joseph A. Loo, Jennifer N. Shepherd, Catherine F. Clarke
Biochim Biophys Acta. Author manuscript; available in PMC 2014 Apr 1.
Published in final edited form as: Biochim Biophys Acta. 2013 Apr; 1831(4): 776–791. Published online 2012 Dec 25. doi: 10.1016/j.bbalip.2012.12.007
PMCID:
PMC3909687
AbstractArticlePDF–4.9M
16.
Molecular mechanisms underlying genotype-dependent responses to dietary restriction
Jennifer Schleit, Simon C. Johnson, Christopher F. Bennett, Marissa Simko, Natalie Trongtham, Anthony Castanza, Edward J. Hsieh, Richard M. Moller, Brian M. Wasko, Joe R. Delaney, George L. Sutphin, Daniel Carr, Christopher J. Murakami, Autumn Tocchi, Bo Xian, Weiyang Chen, Tao Yu, Sarani Goswami, Sean Higgins, Mollie Holmberg, Ki-Soo Jeong, Jin R. Kim, Shannon Klum, Eric Liao, Michael S. Lin, Winston Lo, Hillary Miller, Brady Olsen, Zhao J. Peng, Tom Pollard, Prarthana Pradeep, Dillon Pruett, Dilreet Rai, Vanessa Ros, Minnie Singh, Benjamin L. Spector, Helen Vander Wende, Elroy H. An, Marissa Fletcher, Monika Jelic, Peter S. Rabinovitch, Michael J. MacCoss, Jing-Dong J. Han, Brian K. Kennedy, Matt Kaeberlein
Aging Cell. Author manuscript; available in PMC 2014 Dec 1.
Published in final edited form as: Aging Cell. 2013 Dec; 12(6): 10.1111/acel.12130. Published online 2013 Aug 11. doi: 10.1111/acel.12130
PMCID:
PMC3838465
AbstractArticlePDF–2.3M
17.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
18.
Small Amounts of Isotope-reinforced Polyunsaturated Fatty Acids Suppress Lipid Autoxidation
Shauna Hill, Connor R. Lamberson, Libin Xu, Randy To, Hui S. Tsui, Vadim V. Shmanai, Andrei V. Bekish, Agape M. Awad, Beth N. Marbois, Charles R. Cantor, Ned A. Porter, Catherine F. Clarke, Mikhail S. Shchepinov
Free Radic Biol Med. Author manuscript; available in PMC 2013 Aug 15.
Published in final edited form as: Free Radic Biol Med. 2012 Aug 15; 53(4): 893–906. Published online 2012 Jun 15. doi: 10.1016/j.freeradbiomed.2012.06.004
PMCID:
PMC3437768
AbstractArticlePDF–6.6M
19.
Overexpression of the Coq8 Kinase in Saccharomyces cerevisiae coq Null Mutants Allows for Accumulation of Diagnostic Intermediates of the Coenzyme Q6 Biosynthetic Pathway
Letian X. Xie, Mohammad Ozeir, Jeniffer Y. Tang, Jia Y. Chen, Sylvie-Kieffer Jaquinod, Marc Fontecave, Catherine F. Clarke, Fabien Pierrel
J Biol Chem. 2012 Jul 6; 287(28): 23571–23581. Published online 2012 May 16. doi: 10.1074/jbc.M112.360354
PMCID:
PMC3390632
AbstractArticlePDF–1.6M
20.
La-motif–dependent mRNA association with Slf1 promotes copper detoxification in yeast
Luca Schenk, Dominik M. Meinel, Katja Strässer, André P. Gerber
RNA. 2012 Mar; 18(3): 449–461. doi: 10.1261/rna.028506.111
PMCID:
PMC3285933
AbstractArticlePDF–812K

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