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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 103298742.

Tolerance to replication stress requires Dun1p kinase and activation of the electron transport chain

Shreya Nagar, Riddhi Mehta, Pritpal Kaur, Roshini T. Liliah, Ales Vancura

Biochim Biophys Acta Mol Cell Res. Author manuscript; available in PMC 2024 Jan 1.

Published in final edited form as: Biochim Biophys Acta Mol Cell Res. 2023 Jan; 1870(1): 119382. Published online 2022 Oct 23. doi: 10.1016/j.bbamcr.2022.119382

PMCID:: PMC10329874

Abstract Article PDF–1.9M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 92860234.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89768146.

Yeast Stn1 promotes MCM to circumvent Rad53 control of the S phase checkpoint

Hovik Gasparayan, Chris Caridi, Jeff Julius, Wenyi Feng, Jeff Bachant, Constance I. Nugent

Curr Genet. 2022; 68(2): 165–179. Published online 2022 Feb 12. doi: 10.1007/s00294-022-01228-0

PMCID:: PMC8976814

Abstract Article PDF–6.1M

Select item 88528217.

Error-prone, stress-induced 3’ flap-based Okazaki fragment maturation supports cell survival

Haitao Sun, Zhaoning Lu, Amanpreet Singh, Yajing Zhou, Eric Zheng, Mian Zhou, Jinhui Wang, Xiwei Wu, Zunsong Hu, Zhaohui Gu, Judith L. Campbell, Li Zheng, Binghui Shen

Science. Author manuscript; available in PMC 2022 Feb 17.

Published in final edited form as: Science. 2021 Dec 3; 374(6572): 1252–1258. Published online 2021 Dec 2. doi: 10.1126/science.abj1013

PMCID:: PMC8852821

Abstract Article PDF–1.6M

Select item 88049298.

Oxidative stress protein Oxr1 promotes V‐ATPase holoenzyme disassembly in catalytic activity‐independent manner

Md. Murad Khan, Seowon Lee, Sergio Couoh‐Cardel, Rebecca A Oot, Hyunmin Kim, Stephan Wilkens, Soung‐Hun Roh

EMBO J. 2022 Feb 1; 41(3): e109360. Published online 2021 Dec 17. doi: 10.15252/embj.2021109360

PMCID:: PMC8804929

Abstract Article PDF–5.5M

Select item 85616359.

A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress

Verena Hurst, Kiran Challa, Felix Jonas, Romain Forey, Ragna Sack, Jan Seebacher, Christoph D Schmid, Naama Barkai, Kenji Shimada, Susan M Gasser, Jérôme Poli

EMBO J. 2021 Nov 2; 40(21): e108439. Published online 2021 Sep 27. doi: 10.15252/embj.2021108439

PMCID:: PMC8561635

Abstract Article PDF–6.1M

Select item 855165410.

Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters

Madhura Bhagwat, Shreya Nagar, Pritpal Kaur, Riddhi Mehta, Ivana Vancurova, Ales Vancura

J Biol Chem. 2021 Nov; 297(5): 101246. Published online 2021 Sep 25. doi: 10.1016/j.jbc.2021.101246

PMCID:: PMC8551654

Abstract Article PDF–3.5M

Select item 851195011.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 837314212.

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF

Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu

Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585

PMCID:: PMC8373142

Abstract Article PDF–2.0M

Select item 833991313.

DMSO reduces the cytotoxicity of anticancer ruthenium complex KP1019 in yeast

Jonathan Davis, Anne Cetto, Mary Campbell, Seth Scoggins, Laura Stultz, Pamela Hanson

MicroPubl Biol. 2021; 2021: 10.17912/micropub.biology.000436. Published online 2021 Aug 4. doi: 10.17912/micropub.biology.000436

PMCID:: PMC8339913

Abstract Article PDF–2.0M

Select item 803524414.

The activity of yeast Apn2 AP endonuclease at uracil-derived AP sites is dependent on the major carbon source

Kasey Stokdyk, Alexandra Berroyer, Zacharia A. Grami, Nayun Kim

Curr Genet. Author manuscript; available in PMC 2021 Apr 10.

Published in final edited form as: Curr Genet. 2021 Apr; 67(2): 283–294. Published online 2021 Jan 1. doi: 10.1007/s00294-020-01141-4

PMCID:: PMC8035244

Abstract Article PDF–1.0M

Select item 792480215.

A novel role for Dun1 in the regulation of origin firing upon hyper-acetylation of H3K56

Lihi Gershon, Martin Kupiec

PLoS Genet. 2021 Feb; 17(2): e1009391. Published online 2021 Feb 18. doi: 10.1371/journal.pgen.1009391

PMCID:: PMC7924802

Abstract Article PDF–2.3M

Select item 736234416.

Proteomic analysis of the S. cerevisiae response to the anticancer ruthenium complex KP1019

Laura K. Stultz, Alexandra Hunsucker, Sydney Middleton, Evan Grovenstein, Jacob O’Leary, Eliot Blatt, Mary Miller, James Mobley, Pamela K. Hanson

Metallomics. Author manuscript; available in PMC 2021 Jun 24.

Published in final edited form as: Metallomics. 2020 Jun 24; 12(6): 876–890. doi: 10.1039/d0mt00008f

PMCID:: PMC7362344

Abstract Article PDF–2.0M

Select item 729304117.

Candice Qiu Xia Yam, David Boy Chia, Idina Shi, Hong Hwa Lim, Uttam Surana

Nucleic Acids Res. 2020 Jun 19; 48(11): 6092–6107. Published online 2020 May 13. doi: 10.1093/nar/gkaa355

PMCID:: PMC7293041

Abstract Article PDF–5.5M

Select item 719261318.

High density of unrepaired genomic ribonucleotides leads to Topoisomerase 1-mediated severe growth defects in absence of ribonucleotide reductase

Susana M Cerritelli, Jaime Iranzo, Sushma Sharma, Andrei Chabes, Robert J Crouch, David Tollervey, Aziz El Hage

Nucleic Acids Res. 2020 May 7; 48(8): 4274–4297. Published online 2020 Mar 18. doi: 10.1093/nar/gkaa103

PMCID:: PMC7192613

Abstract Article PDF–7.7M

Select item 710297619.

Exo1 phosphorylation inhibits exonuclease activity and prevents fork collapse in rad53 mutants independently of the 14-3-3 proteins

Esther C Morafraile, Alberto Bugallo, Raquel Carreira, María Fernández, Cristina Martín-Castellanos, Miguel G Blanco, Mónica Segurado

Nucleic Acids Res. 2020 Apr 6; 48(6): 3053–3070. Published online 2020 Feb 5. doi: 10.1093/nar/gkaa054

PMCID:: PMC7102976

Abstract Article PDF–10M

Select item 687677320.

The S phase checkpoint promotes the Smc5/6 complex dependent SUMOylation of Pol2, the catalytic subunit of DNA polymerase ε

Alicja Winczura, Rowin Appanah, Michael H. Tatham, Ronald T. Hay, Giacomo De Piccoli

PLoS Genet. 2019 Nov; 15(11): e1008427. Published online 2019 Nov 25. doi: 10.1371/journal.pgen.1008427

PMCID:: PMC6876773

Abstract Article PDF–2.8M

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