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Items: 1 to 20 of 49

1.
Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast
Johanna Kociemba, Andreas Christ Sølvsten Jørgensen, Nika Tadić, Anthony Harris, Theodora Sideri, Wei Yee Chan, Fairouz Ibrahim, Elçin Ünal, Mark Skehel, Vahid Shahrezaei, Orlando Argüello-Miranda, Folkert Jacobus van Werven
EMBO J. 2024 Aug; 43(15): 3256–3286. Published online 2024 Jun 17. doi: 10.1038/s44318-024-00149-7
PMCID:
PMC11294583
AbstractArticlePDF–5.1M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
2-Hydroxyglutarate modulates histone methylation at specific loci and alters gene expression via Rph1 inhibition
Marios Gavriil, Marco Proietto, Nicole Paczia, Aurelien Ginolhac, Rashi Halder, Elena Valceschini, Thomas Sauter, Carole L Linster, Lasse Sinkkonen
Life Sci Alliance. 2024 Feb; 7(2): e202302333. Published online 2023 Nov 27. doi: 10.26508/lsa.202302333
PMCID:
PMC10681907
AbstractArticlePDF–3.6M
4.
Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress
Andreas Hadjicharalambous, Alex J. Whale, Geylani Can, J. Mark Skehel, Jonathan M. Houseley, Philip Zegerman
Version 1. Wellcome Open Res. 2023; 8: 327. Published online 2023 Jul 26. doi: 10.12688/wellcomeopenres.19617.1
PMCID:
PMC10521137
AbstractArticlePDF–4.0M
5.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential
Ryan J. Separovich, Mandy W.M. Wong, Tyler R. Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins
J Biol Chem. 2021 Jan-Jun; 296: 100192. Published online 2020 Dec 20. doi: 10.1074/jbc.RA120.015995
PMCID:
PMC7948420
AbstractArticlePDF–3.8M
8.
An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation
Andrew M. Lerner, Austin J. Hepperla, Gregory R. Keele, Hashem A. Meriesh, Hayretin Yumerefendi, David Restrepo, Seth Zimmerman, James E. Bear, Brian Kuhlman, Ian J. Davis, Brian D. Strahl
Genome Res. 2020 Nov; 30(11): 1605–1617. doi: 10.1101/gr.264283.120
PMCID:
PMC7605256
AbstractArticlePDF–6.1M
9.
Rph1 coordinates transcription of ribosomal protein genes and ribosomal RNAs to control cell growth under nutrient stress conditions
Wen-Jie Shu, Runfa Chen, Zhao-Hong Yin, Feng Li, Heng Zhang, Hai-Ning Du
Nucleic Acids Res. 2020 Sep 4; 48(15): 8360–8373. Published online 2020 Jul 3. doi: 10.1093/nar/gkaa558
PMCID:
PMC7470948
AbstractArticlePDF–6.1M
10.
Demethylation of the protein phosphatase PP2A promotes demethylation of histones to enable their function as a methyl group sink
Cunqi Ye, Benjamin M. Sutter, Yun Wang, Zheng Kuang, Xiaozheng Zhao, Yonghao Yu, Benjamin P. Tu
Mol Cell. Author manuscript; available in PMC 2020 Mar 21.
Published in final edited form as: Mol Cell. 2019 Mar 21; 73(6): 1115–1126.e6. Published online 2019 Feb 13. doi: 10.1016/j.molcel.2019.01.012
PMCID:
PMC6628921
AbstractArticlePDF–2.2M
11.
Rpd3L Contributes to the DNA Damage Sensitivity of Saccharomyces cerevisiae Checkpoint Mutants
Belén Gómez-González, Harshil Patel, Anne Early, John F. X. Diffley
Genetics. 2019 Feb; 211(2): 503–513. Published online 2018 Dec 17. doi: 10.1534/genetics.118.301817
PMCID:
PMC6366903
AbstractArticlePDF–1.7M
12.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
13.
Combinatorial Genetic Control of Rpd3S Through Histone H3K4 and H3K36 Methylation in Budding Yeast
Kwan Yin Lee, Mathieu Ranger, Marc D. Meneghini
G3 (Bethesda) 2018 Nov; 8(11): 3411–3420. Published online 2018 Aug 29. doi: 10.1534/g3.118.200589
PMCID:
PMC6222569
AbstractArticlePDF–1.8M
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
17.
Gcn5-mediated Rph1 acetylation regulates its autophagic degradation under DNA damage stress
Feng Li, Liang-De Zheng, Xin Chen, Xiaolu Zhao, Scott D. Briggs, Hai-Ning Du
Nucleic Acids Res. 2017 May 19; 45(9): 5183–5197. Published online 2017 Feb 21. doi: 10.1093/nar/gkx129
PMCID:
PMC5435933
AbstractArticlePDF–3.8M
18.
Oncometabolite D-2-Hydroxyglutarate enhances gene silencing through inhibition of specific H3K36 histone demethylases
Ryan Janke, Anthony T Iavarone, Jasper Rine
eLife. 2017; 6: e22451. Published online 2017 Mar 27. doi: 10.7554/eLife.22451
PMCID:
PMC5388528
AbstractArticlePDF–2.2M
19.
Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library
Ji-Young Youn, Helena Friesen, Alex N. Nguyen Ba, Wendy Liang, Vincent Messier, Mike J. Cox, Alan M. Moses, Brenda Andrews
G3 (Bethesda) 2017 Mar; 7(3): 911–921. Published online 2017 Jan 22. doi: 10.1534/g3.116.038471
PMCID:
PMC5345721
AbstractArticlePDF–1.6M
20.
A pathway of targeted autophagy is induced by DNA damage in budding yeast
Vinay V. Eapen, David P. Waterman, Amélie Bernard, Nathan Schiffmann, Enrich Sayas, Roarke Kamber, Brenda Lemos, Gonen Memisoglu, Jessie Ang, Allison Mazella, Silvia G. Chuartzman, Robbie J. Loewith, Maya Schuldiner, Vladimir Denic, Daniel J. Klionsky, James E. Haber
Proc Natl Acad Sci U S A. 2017 Feb 14; 114(7): E1158–E1167. Published online 2017 Feb 2. doi: 10.1073/pnas.1614364114
PMCID:
PMC5320992
AbstractArticlePDF–1.5M

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