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Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 30319612.

Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S7

Ryan E. Schaub, Christopher S. Hayes

Mol Microbiol. Author manuscript; available in PMC 2012 Jan 1.

Published in final edited form as: Mol Microbiol. 2011 Jan; 79(2): 331–341. Published online 2010 Nov 29. doi: 10.1111/j.1365-2958.2010.07467.x

PMCID:: PMC3031961

Abstract Article PDF–1.4M

Select item 29192093.

Structures of the ribosome in intermediate states of ratcheting

Wen Zhang, Jack Dunkle, Jamie H. D. Cate

Science. Author manuscript; available in PMC 2010 Aug 10.

Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275

PMCID:: PMC2919209

Abstract Article PDF–2.2M

Select item 27992524.

Promiscuous Substrate Recognition in Folding and Assembly Activities of the Trigger Factor Chaperone

Erik Martinez-Hackert, Wayne A. Hendrickson

Cell. Author manuscript; available in PMC 2010 Mar 4.

Published in final edited form as: Cell. 2009 Sep 4; 138(5): 923–934. doi: 10.1016/j.cell.2009.07.044

PMCID:: PMC2799252

Abstract Article PDF–4.3M

Select item 27786115.

Regulation of the protein-conducting channel by a bound ribosome

James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten

Structure. Author manuscript; available in PMC 2010 Nov 11.

Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010

PMCID:: PMC2778611

Abstract Article PDF–3.1M

Select item 27207986.

Concurrent Nucleation of 16S Folding and Induced Fit in 30 S Ribosome Assembly

Tadepalli Adilakshmi, Deepti L. Bellur, Sarah A. Woodson

Nature. Author manuscript; available in PMC 2009 Oct 30.

Published in final edited form as: Nature. 2008 Oct 30; 455(7217): 1268–1272. Published online 2008 Sep 10. doi: 10.1038/nature07298

PMCID:: PMC2720798

Abstract Article PDF–1.0M

Select item 26487077.

A role for the 30S subunit E site in maintenance of the translational reading frame

Aishwarya Devaraj, Shinichiro Shoji, Eric D. Holbrook, Kurt Fredrick

RNA. 2009 Feb; 15(2): 255–265. doi: 10.1261/rna.1320109

PMCID:: PMC2648707

Abstract Article PDF–1.1M

Select item 22921778.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 16814829.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148110.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 137082111.

Conformation of 4.5S RNA in the signal recognition particle and on the 30S ribosomal subunit

SHAN-QING GU, JOHANNES JÖCKEL, PHILIPP BEINKER, JENS WARNECKE, YURI P. SEMENKOV, MARINA V. RODNINA, WOLFGANG WINTERMEYER

RNA. 2005 Sep; 11(9): 1374–1384. doi: 10.1261/rna.7219805

PMCID:: PMC1370821

Abstract Article PDF–388K

Select item 137067512.

Assembly of the 30S ribosomal subunit: Positioning ribosomal protein S13 in the S7 assembly branch

JOEL F. GRONDEK, GLORIA M. CULVER

RNA. 2004 Dec; 10(12): 1861–1866. doi: 10.1261/rna.7130504

PMCID:: PMC1370675

Abstract Article PDF–310K

Select item 137003313.

Mapping of the RNA recognition site of Escherichia coli ribosomal protein S7.

F Robert, M Gagnon, D Sans, S Michnick, L Brakier-Gingras

RNA. 2000 Nov; 6(11): 1649–1659. doi: 10.1017/s1355838200001199

PMCID:: PMC1370033

Summary PDF–2.8M

Select item 136987414.

The cross-link from the upstream region of mRNA to ribosomal protein S7 is located in the C-terminal peptide: experimental verification of a prediction from modeling studies.

B Greuer, B Thiede, R Brimacombe

RNA. 1999 Dec; 5(12): 1521–1525. doi: 10.1017/s1355838299991550

PMCID:: PMC1369874

Summary PDF–638K

Select item 136954815.

Photoaffinity labeling of 30S-subunit proteins S7 and S11 by 4-thiouridine-substituted tRNA(Phe) situated at the P site of Escherichia coli ribosomes.

K V Rosen, R A Zimmerman

RNA. 1997 Sep; 3(9): 1028–1036.

PMCID:: PMC1369548

Summary PDF–14M

Select item 132520016.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 52167117.

A novel GTPase activated by the small subunit of ribosome

Hyouta Himeno, Kyoko Hanawa-Suetsugu, Takatsugu Kimura, Kuniaki Takagi, Wakana Sugiyama, Shinobu Shirata, Tomoyuki Mikami, Fujiko Odagiri, Yukiko Osanai, Daisuke Watanabe, Simon Goto, Liliya Kalachnyuk, Chisato Ushida, Akira Muto

Nucleic Acids Res. 2004; 32(17): 5303–5309. Published online 2004 Oct 5. doi: 10.1093/nar/gkh861