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Items: 17

1.
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili
PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096
PMCID:
PMC2672614
AbstractArticle
2.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
3.
Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli
Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla
J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06
PMCID:
PMC1698209
AbstractArticlePDF–779K
4.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
5.
Generating Tetracycline-Inducible Auxotrophy in Escherichia coli and Salmonella enterica Serovar Typhimurium by Using an Insertion Element and a Hyperactive Transposase
Martin Köstner, Britta Schmidt, Ralph Bertram, Wolfgang Hillen
Appl Environ Microbiol. 2006 Jul; 72(7): 4717–4725. doi: 10.1128/AEM.00492-06
PMCID:
PMC1489314
AbstractArticlePDF–329K
6.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
7.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
8.
The serC-aro A operon of Escherichia coli. A mixed function operon encoding enzymes from two different amino acid biosynthetic pathways.
K Duncan, J R Coggins
Biochem J. 1986 Feb 15; 234(1): 49–57. doi: 10.1042/bj2340049
PMCID:
PMC1146525
SummaryPage BrowsePDF–1.8M
9.
Metabolic relationships between pyridoxine (vitamin B6) and serine biosynthesis in Escherichia coli K-12.
H M Lam, M E Winkler
J Bacteriol. 1990 Nov; 172(11): 6518–6528. doi: 10.1128/jb.172.11.6518-6528.1990
PMCID:
PMC526841
SummaryPage BrowsePDF–2.1M
10.
Extensive homology between the Escherichia coli K-12 SerC(PdxF) aminotransferase and a protein encoded by a progesterone-induced mRNA in rabbit and human endometria.
A van der Zel, H M Lam, M E Winkler
Nucleic Acids Res. 1989 Oct 25; 17(20): 8379. doi: 10.1093/nar/17.20.8379
PMCID:
PMC334985
SummaryPage BrowsePDF–115K
11.
DNA sequence and characterization of the Escherichia coli serB gene.
A F Neuwald, G V Stauffer
Nucleic Acids Res. 1985 Oct 11; 13(19): 7025–7039. doi: 10.1093/nar/13.19.7025
PMCID:
PMC322020
SummaryPage BrowsePDF–1.4M
12.
Characterization of Pyridoxine Auxotrophs of Escherichia coli: Serine and PdxF Mutants
Walter B. Dempsey, Hajime Itoh
J Bacteriol. 1970 Nov; 104(2): 658–667. doi: 10.1128/jb.104.2.658-667.1970
PMCID:
PMC285042
SummaryPage BrowsePDF–1.4M
13.
Close Linkage of the Genes serC (for Phosphohydroxy Pyruvate Transaminase) and serS (for Seryl-Transfer Ribonucleic Acid Synthetase) in Escherichia coli K-12
S. J. Clarke, B. Low, W. H. Konigsberg
J Bacteriol. 1973 Mar; 113(3): 1091–1095. doi: 10.1128/jb.113.3.1091-1095.1973
PMCID:
PMC251668
SummaryPage BrowsePDF–718K
14.
Identification of the Forms of Vitamin B6 Present in the Culture Media of “Vitamin B6 Control” Mutants
Walter B. Dempsey, Larry J. Arcement
J Bacteriol. 1971 Aug; 107(2): 580–582. doi: 10.1128/jb.107.2.580-582.1971
PMCID:
PMC246967
SummaryPage BrowsePDF–284K
15.
3-hydroxypyruvate substitutes for pyridoxine in serC mutants of Escherichia coli K-12.
S Shimizu, W B Dempsey
J Bacteriol. 1978 Jun; 134(3): 944–949. doi: 10.1128/jb.134.3.944-949.1978
PMCID:
PMC222342
SummaryPage BrowsePDF–837K
16.
Genetic characterization of a highly efficient alternate pathway of serine biosynthesis in Escherichia coli.
P D Ravnikar, R L Somerville
J Bacteriol. 1987 Jun; 169(6): 2611–2617. doi: 10.1128/jb.169.6.2611-2617.1987
PMCID:
PMC212135
SummaryPage BrowsePDF–1.4M
17.
Maximization of transcription of the serC (pdxF)-aroA multifunctional operon by antagonistic effects of the cyclic AMP (cAMP) receptor protein-cAMP complex and Lrp global regulators of Escherichia coli K-12.
T K Man, A J Pease, M E Winkler
J Bacteriol. 1997 Jun; 179(11): 3458–3469. doi: 10.1128/jb.179.11.3458-3469.1997
PMCID:
PMC179136
SummaryPDF–847K

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