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Items: 17

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
2.
Autoregulation of the Escherichia coli melR promoter: repression involves four molecules of MelR
Shivanthi Samarasinghe, Mohamed Samir El-Robh, David C. Grainger, Wenke Zhang, Panos Soultanas, Stephen J. W. Busby
Nucleic Acids Res. 2008 May; 36(8): 2667–2676. Published online 2008 Mar 16. doi: 10.1093/nar/gkn119
PMCID:
PMC2377442
AbstractArticlePDF–305K
3.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
4.
Mutational Analysis of the Escherichia coli melR Gene Suggests a Two-State Concerted Model To Explain Transcriptional Activation and Repression in the Melibiose Operon
Christina Kahramanoglou, Christine L. Webster, Mohamed Samir el-Robh, Tamara A. Belyaeva, Stephen J. W. Busby
J Bacteriol. 2006 May; 188(9): 3199–3207. doi: 10.1128/JB.188.9.3199-3207.2006
PMCID:
PMC1447455
AbstractArticlePDF–191K
5.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
6.
Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome
David C. Grainger, Douglas Hurd, Marcus Harrison, Jolyon Holdstock, Stephen J. W. Busby
Proc Natl Acad Sci U S A. 2005 Dec 6; 102(49): 17693–17698. Published online 2005 Nov 21. doi: 10.1073/pnas.0506687102
PMCID:
PMC1308901
AbstractArticlePDF–573K
7.
Interactions between the Escherichia coli MelR transcription activator protein and operator sequences at the melAB promoter.
J Williams, C Michan, C Webster, S Busby
Biochem J. 1994 Jun 15; 300(Pt 3): 757–763. doi: 10.1042/bj3000757
PMCID:
PMC1138231
SummaryPage BrowsePDF–1.4M
8.
Overexpression, purification and characterization of the Escherichia coli MelR transcription activator protein.
R Caswell, J Williams, A Lyddiatt, S Busby
Biochem J. 1992 Oct 15; 287(Pt 2): 493–499. doi: 10.1042/bj2870493
PMCID:
PMC1133192
SummaryPage BrowsePDF–1.5M
9.
Genomic Studies with Escherichia coli MelR Protein: Applications of Chromatin Immunoprecipitation and Microarrays
David C. Grainger, Timothy W. Overton, Nikos Reppas, Joseph T. Wade, Eiji Tamai, Jon L. Hobman, Chrystala Constantinidou, Kevin Struhl, George Church, Stephen J. W. Busby
J Bacteriol. 2004 Oct; 186(20): 6938–6943. doi: 10.1128/JB.186.20.6938-6943.2004
PMCID:
PMC522211
AbstractArticlePDF–198K
10.
Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.
V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels, F R Blattner
Nucleic Acids Res. 1995 Jun 25; 23(12): 2105–2119. doi: 10.1093/nar/23.12.2105
PMCID:
PMC306997
SummaryPage BrowsePDF–2.5M
11.
The Escherichia coli MelR transcription activator: production of a stable fragment containing the DNA-binding domain.
C M Michán, S J Busby, E I Hyde
Nucleic Acids Res. 1995 May 11; 23(9): 1518–1523. doi: 10.1093/nar/23.9.1518
PMCID:
PMC306891
SummaryPage BrowsePDF–1.4M
12.
Arac/XylS family of transcriptional regulators.
M T Gallegos, R Schleif, A Bairoch, K Hofmann, J L Ramos
Microbiol Mol Biol Rev. 1997 Dec; 61(4): 393–410. doi: 10.1128/mmbr.61.4.393-410.1997
PMCID:
PMC232617
SummaryPDF–702K
13.
Transcription Regulation by Tandem-Bound FNR at Escherichia coli Promoters
Anne M. L. Barnard, Jeffrey Green, Stephen J. W. Busby
J Bacteriol. 2003 Oct; 185(20): 5993–6004. doi: 10.1128/JB.185.20.5993-6004.2003
PMCID:
PMC225037
AbstractArticlePDF–1.2M
14.
DNA binding and DNA bending by the MelR transcription activator protein from Escherichia coli.
S J Bourgerie, C M Michán, M S Thomas, S J Busby, E I Hyde
Nucleic Acids Res. 1997 May 1; 25(9): 1685–1693. doi: 10.1093/nar/25.9.1685
PMCID:
PMC146657
SummaryPDF–190K
15.
A simple mechanism for co-dependence on two activators at an Escherichia coli promoter
Joseph T. Wade, Tamara A. Belyaeva, Eva I. Hyde, Stephen J.W. Busby
EMBO J. 2001 Dec 17; 20(24): 7160–7167. doi: 10.1093/emboj/20.24.7160
PMCID:
PMC125794
AbstractArticlePDF–334K
16.
DNA binding of the transcription activator protein MelR from Escherichia coli and its C-terminal domain
Victoria J. Howard, Tamara A. Belyaeva, Stephen J. W. Busby, Eva I. Hyde
Nucleic Acids Res. 2002 Jun 15; 30(12): 2692–2700. doi: 10.1093/nar/gkf370
PMCID:
PMC117283
AbstractArticlePDF–412K
17.
AraC-XylS database: a family of positive transcriptional regulators in bacteria
Raquel Tobes, Juan L. Ramos
Nucleic Acids Res. 2002 Jan 1; 30(1): 318–321. doi: 10.1093/nar/30.1.318
PMCID:
PMC99111
AbstractArticlePDF–79K

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