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Items: 15

1.
Dissecting the conformational complexity and mechanism of a bacterial heme transporter
Di Wu, Ahmad R. Mehdipour, Franziska Finke, Hojjat G. Goojani, Roan R. Groh, Tamara N. Grund, Thomas M. B. Reichhart, Rita Zimmermann, Sonja Welsch, Dirk Bald, Mark Shepherd, Gerhard Hummer, Schara Safarian
Nat Chem Biol. 2023; 19(8): 992–1003. Published online 2023 Apr 24. doi: 10.1038/s41589-023-01314-5
PMCID:
PMC10374445
AbstractArticlePDF–18M
2.
CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress
Louise V. Holyoake, Stuart Hunt, Guido Sanguinetti, Gregory M. Cook, Mark J. Howard, Michelle L. Rowe, Robert K. Poole, Mark Shepherd
Biochem J. 2016 Mar 15; 473(Pt 6): 693–701. Prepublished online 2015 Dec 23. Published online 2016 Mar 10. doi: 10.1042/BJ20150536
PMCID:
PMC4785604
AbstractArticlePDF–966K
3.
Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks
John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley
Genomics. Author manuscript; available in PMC 2010 Jan 1.
Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001
PMCID:
PMC2633870
AbstractArticlePDF–1.9M
4.
Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12
Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui
J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06
PMCID:
PMC1797309
AbstractArticlePDF–141K
5.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
6.
TCDB: the Transporter Classification Database for membrane transport protein analyses and information
Milton H. Saier, Jr, Can V. Tran, Ravi D. Barabote
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D181–D186. Published online 2005 Dec 28. doi: 10.1093/nar/gkj001
PMCID:
PMC1334385
AbstractArticlePDF–550K
7.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
8.
Identification of the cydC locus required for expression of the functional form of the cytochrome d terminal oxidase complex in Escherichia coli.
C D Georgiou, H Fang, R B Gennis
J Bacteriol. 1987 May; 169(5): 2107–2112. doi: 10.1128/jb.169.5.2107-2112.1987
PMCID:
PMC212105
SummaryPage BrowsePDF–1.3M
9.
Isolation and characterization of the Escherichia coli htrD gene, whose product is required for growth at high temperatures.
J M Delaney, D Ang, C Georgopoulos
J Bacteriol. 1992 Feb; 174(4): 1240–1247. doi: 10.1128/jb.174.4.1240-1247.1992
PMCID:
PMC206417
SummaryPage BrowsePDF–1.5M
10.
Physical map locations of the trxB, htrD, cydC, and cydD genes of Escherichia coli.
J M Delaney, C Georgopoulos
J Bacteriol. 1992 Jun; 174(11): 3824–3825. doi: 10.1128/jb.174.11.3824-3825.1992
PMCID:
PMC206076
SummaryPage BrowsePDF–357K
11.
Molecular characterization of the Escherichia coli htrD gene: cloning, sequence, regulation, and involvement with cytochrome d oxidase.
J M Delaney, D Wall, C Georgopoulos
J Bacteriol. 1993 Jan; 175(1): 166–175. doi: 10.1128/jb.175.1.166-175.1993
PMCID:
PMC196110
SummaryPage BrowsePDF–1.9M
12.
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
AbstractArticlePDF–192K
13.
Transcriptional regulation of the cydDC operon, encoding a heterodimeric ABC transporter required for assembly of cytochromes c and bd in Escherichia coli K-12: regulation by oxygen and alternative electron acceptors.
G M Cook, J Membrillo-Hernández, R K Poole
J Bacteriol. 1997 Oct; 179(20): 6525–6530. doi: 10.1128/jb.179.20.6525-6530.1997
PMCID:
PMC179575
SummaryPDF–445K
14.
The temperature-sensitive growth and survival phenotypes of Escherichia coli cydDC and cydAB strains are due to deficiencies in cytochrome bd and are corrected by exogenous catalase and reducing agents.
B S Goldman, K K Gabbert, R G Kranz
J Bacteriol. 1996 Nov; 178(21): 6348–6351. doi: 10.1128/jb.178.21.6348-6351.1996
PMCID:
PMC178510
SummaryPDF–341K
15.
Use of heme reporters for studies of cytochrome biosynthesis and heme transport.
B S Goldman, K K Gabbert, R G Kranz
J Bacteriol. 1996 Nov; 178(21): 6338–6347. doi: 10.1128/jb.178.21.6338-6347.1996
PMCID:
PMC178509
SummaryPDF–1.6M

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