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Select item 75493631.

Overproduction of a Dominant Mutant of the Conserved Era GTPase Inhibits Cell Division in Escherichia coli

Xiaomei Zhou, Howard K. Peters, III, Xintian Li, Nina Costantino, Vandana Kumari, Genbin Shi, Chao Tu, Todd A. Cameron, Daniel P. Haeusser, Daniel E. Vega, Xinhua Ji, William Margolin, Donald L. Court

J Bacteriol. 2020 Nov; 202(21): e00342-20. Prepublished online 2020 Aug 17. Published online 2020 Oct 8. doi: 10.1128/JB.00342-20

PMCID:: PMC7549363

Abstract Article PDF–1.6M

Select item 67361332.

Role of Era in assembly and homeostasis of the ribosomal small subunit

Aida Razi, Joseph H Davis, Yumeng Hao, Dushyant Jahagirdar, Brett Thurlow, Kaustuv Basu, Nikhil Jain, Josue Gomez-Blanco, Robert A Britton, Javier Vargas, Alba Guarné, Sarah A Woodson, James R Williamson, Joaquin Ortega

Nucleic Acids Res. 2019 Sep 5; 47(15): 8301–8317. Published online 2019 Jul 2. doi: 10.1093/nar/gkz571

PMCID:: PMC6736133

Abstract Article PDF–10M

Select item 66224623.

Structural insights into cell cycle control by essential GTPase Era

Xinhua Ji

Postepy Biochem. Author manuscript; available in PMC 2019 Jul 11.

Published in final edited form as: Postepy Biochem. 2016; 62(3): 335–342.

PMCID:: PMC6622462

Abstract Article PDF–1.2M

Select item 63668614.

Affinity-based capture and identification of protein effectors of the growth regulator ppGpp

Boyuan Wang, Peng Dai, David Ding, Amanda Del Rosario, Robert A. Grant, Bradley L. Pentelute, Michael T. Laub

Nat Chem Biol. Author manuscript; available in PMC 2019 Jun 17.

Published in final edited form as: Nat Chem Biol. 2019 Feb; 15(2): 141–150. Published online 2018 Dec 17. doi: 10.1038/s41589-018-0183-4

Correction in:: Nat Chem Biol. 2019 May 10

PMCID:: PMC6366861

Abstract Article PDF–2.2M

Select item 61917165.

Reconstitution of 30S ribosomal subunits in vitro using ribosome biogenesis factors

Daichi Tamaru, Kazuaki Amikura, Yoshihiro Shimizu, Knud H. Nierhaus, Takuya Ueda

RNA. 2018 Nov; 24(11): 1512–1519. doi: 10.1261/rna.065615.118

PMCID:: PMC6191716

Abstract Article PDF–771K

Select item 60881646.

Elevated Levels of Era GTPase Improve Growth, 16S rRNA Processing, and 70S Ribosome Assembly of Escherichia coli Lacking Highly Conserved Multifunctional YbeY Endoribonuclease

Anubrata Ghosal, Vignesh M. P. Babu, Graham C. Walker

J Bacteriol. 2018 Sep 1; 200(17): e00278-18. Prepublished online 2018 Jun 18. Published online 2018 Aug 10. doi: 10.1128/JB.00278-18

PMCID:: PMC6088164

Abstract Article PDF–1.2M

Select item 58450047.

Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli

Yong Zhang, Eva Zborníková, Dominik Rejman, Kenn Gerdes

mBio. 2018 Mar-Apr; 9(2): e02188-17. Published online 2018 Mar 6. doi: 10.1128/mBio.02188-17

PMCID:: PMC5845004

Abstract Article PDF–3.1M

Select item 51013528.

Identification of YbeY-Protein Interactions Involved in 16S rRNA Maturation and Stress Regulation in Escherichia coli

Maarten Vercruysse, Caroline Köhrer, Yang Shen, Sandra Proulx, Anubrata Ghosal, Bryan W. Davies, Uttam L. RajBhandary, Graham C. Walker

mBio. 2016 Nov-Dec; 7(6): e01785-16. Published online 2016 Nov 8. doi: 10.1128/mBio.01785-16

PMCID:: PMC5101352

Abstract Article PDF–1.9M

Select item 41238559.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 286611810.

The Effect of Ribosome Assembly Cofactors on In Vitro 30S Subunit Reconstitution

Anne E. Bunner, Stefan Nord, P. Mikael Wikström, James R. Williamson

J Mol Biol. Author manuscript; available in PMC 2011 Apr 23.

Published in final edited form as: J Mol Biol. 2010 Apr 23; 398(1): 1–7. Published online 2010 Feb 24. doi: 10.1016/j.jmb.2010.02.036

PMCID:: PMC2866118

Abstract Article PDF–1.4M

Select item 273642811.

Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis

Chao Tu, Xiaomei Zhou, Joseph E. Tropea, Brian P. Austin, David S. Waugh, Donald L. Court, Xinhua Ji

Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14843–14848. Published online 2009 Aug 17. doi: 10.1073/pnas.0904032106

PMCID:: PMC2736428

Abstract Article PDF–2.3M

Select item 229317712.

Genetic Interaction Screens with Ordered Overexpression and Deletion Clone Sets Implicate the Escherichia coli GTPase YjeQ in Late Ribosome Biogenesis

Tracey L. Campbell, Eric D. Brown

J Bacteriol. 2008 Apr; 190(7): 2537–2545. Published online 2008 Jan 25. doi: 10.1128/JB.01744-07

PMCID:: PMC2293177

Abstract Article PDF–236K

Select item 216893313.

Dissection of 16S rRNA Methyltransferase (KsgA) Function in Escherichia coli

Koichi Inoue, Soumit Basu, Masayori Inouye

J Bacteriol. 2007 Dec; 189(23): 8510–8518. Published online 2007 Sep 21. doi: 10.1128/JB.01259-07

PMCID:: PMC2168933

Abstract Article PDF–350K

Select item 187459314.

Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes

Rory M. Watt, Jing Wang, Meikid Leong, Hsiang-fu Kung, Kathryn S.E. Cheah, Depei Liu, Antoine Danchin, Jian-Dong Huang

Nucleic Acids Res. 2007 Mar; 35(6): e37. Published online 2007 Jan 31. doi: 10.1093/nar/gkl1158

PMCID:: PMC1874593

Abstract Article PDF–5.3M

Select item 168148215.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148116.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520017.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405