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Select item 73170451.

Interactions between DksA and Stress-Responsive Alternative Sigma Factors Control Inorganic Polyphosphate Accumulation in Escherichia coli

Michael J. Gray

J Bacteriol. 2020 Jul; 202(14): e00133-20. Prepublished online 2020 Apr 27. Published online 2020 Jun 25. doi: 10.1128/JB.00133-20

PMCID:: PMC7317045

Abstract Article PDF–694K

Select item 67378932.

Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria

Claire L. Hews, Timothy Cho, Gary Rowley, Tracy L. Raivio

Front Cell Infect Microbiol. 2019; 9: 313. Published online 2019 Sep 4. doi: 10.3389/fcimb.2019.00313

PMCID:: PMC6737893

Abstract Article PDF–1.5M

Select item 66488963.

Structures and mechanism of transcription initiation by bacterial ECF factors

Chengli Fang, Lingting Li, Liqiang Shen, Jing Shi, Sheng Wang, Yu Feng, Yu Zhang

Nucleic Acids Res. 2019 Jul 26; 47(13): 7094–7104. Published online 2019 May 27. doi: 10.1093/nar/gkz470

PMCID:: PMC6648896

Abstract Article PDF–4.0M

Select item 65096524.

Fine-Tuning of σ^E Activation Suppresses Multiple Assembly-Defective Mutations in Escherichia coli

Elizabeth M. Hart, Aileen O’Connell, Kimberly Tang, Joseph S. Wzorek, Marcin Grabowicz, Daniel Kahne, Thomas J. Silhavy

J Bacteriol. 2019 Jun 1; 201(11): e00745-18. Prepublished online 2019 Mar 11. Published online 2019 May 8. doi: 10.1128/JB.00745-18

PMCID:: PMC6509652

Abstract Article PDF–1.9M

Select item 54466255.

Appropriate Regulation of the σ^E-Dependent Envelope Stress Response Is Necessary To Maintain Cell Envelope Integrity and Stationary-Phase Survival in Escherichia coli

Hervé Nicoloff, Saumya Gopalkrishnan, Sarah E. Ades

J Bacteriol. 2017 Jun 15; 199(12): e00089-17. Prepublished online 2017 Apr 3. Published online 2017 May 25. doi: 10.1128/JB.00089-17

PMCID:: PMC5446625

Abstract Article PDF–2.8M

Select item 50877216.

Multiple Transcriptional Factors Regulate Transcription of the rpoE Gene in Escherichia coli under Different Growth Conditions and When the Lipopolysaccharide Biosynthesis Is Defective

Gracjana Klein, Anna Stupak, Daria Biernacka, Pawel Wojtkiewicz, Buko Lindner, Satish Raina

J Biol Chem. 2016 Oct 28; 291(44): 22999–23019. Published online 2016 Sep 14. doi: 10.1074/jbc.M116.748954

PMCID:: PMC5087721

Abstract Article PDF–4.1M

Select item 49845537.

A Suppressor Mutation That Creates a Faster and More Robust σE Envelope Stress Response

Anna Konovalova, Jaclyn A. Schwalm, Thomas J. Silhavy

J Bacteriol. 2016 Sep 1; 198(17): 2345–2351. Prepublished online 2016 Jun 20. Published online 2016 Aug 11. doi: 10.1128/JB.00340-16

PMCID:: PMC4984553

Abstract Article PDF–373K

Select item 44973808.

Co-ordinated regulation of the extracytoplasmic stress factor, sigmaE, with other Escherichia coli sigma factors by (p)ppGpp and DksA may be achieved by specific regulation of individual holoenzymes

Saumya Gopalkrishnan, Herve Nicoloff, Sarah E. Ades

Mol Microbiol. Author manuscript; available in PMC 2015 Aug 1.

Published in final edited form as: Mol Microbiol. 2014 Aug; 93(3): 479–493. Published online 2014 Jul 10. doi: 10.1111/mmi.12674

PMCID:: PMC4497380

Abstract Article PDF–4.6M

Select item 44470679.

Characterization of the Escherichia coli σ^S core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis

Clelia Peano, Johannes Wolf, Julien Demol, Elio Rossi, Luca Petiti, Gianluca De Bellis, Johannes Geiselmann, Thomas Egli, Stephan Lacour, Paolo Landini

Sci Rep. 2015; 5: 10469. Published online 2015 May 28. doi: 10.1038/srep10469

PMCID:: PMC4447067

Abstract Article PDF–1.5M

Select item 432510610.

Activation of the σ^E-Dependent Stress Pathway by Conjugative TraR May Anticipate Conjugational Stress

Elicia D. Grace, Saumya Gopalkrishnan, Mary E. Girard, Matthew D. Blankschien, Wilma Ross, Richard L. Gourse, Christophe Herman

J Bacteriol. 2015 Mar; 197(5): 924–931. Prepublished online 2014 Dec 22. Published online 2015 Feb 4. doi: 10.1128/JB.02279-14

PMCID:: PMC4325106

Abstract Article PDF–1.6M

Select item 412385511.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 330631112.

Reversal of the ΔdegP Phenotypes by a Novel rpoE Allele of Escherichia coli

Owen P. Leiser, Emily S. Charlson, Henri Gerken, Rajeev Misra

PLoS One. 2012; 7(3): e33979. Published online 2012 Mar 16. doi: 10.1371/journal.pone.0033979

PMCID:: PMC3306311

Abstract Article PDF–503K

Select item 320922313.

Recognition of β-Strand Motifs by RseB Is Required for σ^E Activity in Escherichia coli

Adam Kulp, Meta J. Kuehn

J Bacteriol. 2011 Nov; 193(22): 6179–6186. doi: 10.1128/JB.05657-11

PMCID:: PMC3209223

Abstract Article PDF–1019K

Select item 290935614.

The σ^E stress response is required for stress-induced mutation and amplification in Escherichia coli

Janet L Gibson, Mary-Jane Lombardo, Philip C Thornton, Kenneth H Hu, Rodrigo S Galhardo, Bernadette Beadle, Anand Habib, Daniel B Magner, Laura S Frost, Christophe Herman, P J Hastings, Susan M Rosenberg

Mol Microbiol. 2010 Jul; 77(2): 415–430. Published online 2010 Jun 7. doi: 10.1111/j.1365-2958.2010.07213.x

PMCID:: PMC2909356

Abstract Article PDF–814K

Select item 278657115.

Promoter Strength Properties of the Complete Sigma E Regulon of Escherichia coli and Salmonella enterica

Vivek K. Mutalik, Gen Nonaka, Sarah E. Ades, Virgil A. Rhodius, Carol A. Gross

J Bacteriol. 2009 Dec; 191(23): 7279–7287. Published online 2009 Sep 25. doi: 10.1128/JB.01047-09

PMCID:: PMC2786571

Abstract Article PDF–1.8M

Select item 273644716.

Cleavage of RseA by RseP requires a carboxyl-terminal hydrophobic amino acid following DegS cleavage

Xiaochun Li, Boyuan Wang, Lihui Feng, Hui Kang, Yang Qi, Jiawei Wang, Yigong Shi

Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14837–14842. Published online 2009 Aug 17. doi: 10.1073/pnas.0903289106

PMCID:: PMC2736447

Abstract Article PDF–1.6M

Select item 273642117.

Rip exposed: How ectodomain shedding regulates the proteolytic processing of transmembrane substrates

Daniel R. Dries, Gang Yu

Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14737–14738. Published online 2009 Aug 26. doi: 10.1073/pnas.0908124106

PMCID:: PMC2736421

Article PDF–132K

Select item 273193118.

Global Analysis of Extracytoplasmic Stress Signaling in Escherichia coli

Stéphanie Bury-Moné, Yanoura Nomane, Nancie Reymond, Romain Barbet, Eric Jacquet, Sandrine Imbeaud, Annick Jacq, Philippe Bouloc

PLoS Genet. 2009 Sep; 5(9): e1000651. Published online 2009 Sep 18. doi: 10.1371/journal.pgen.1000651

PMCID:: PMC2731931

Abstract Article PDF–317K

Select item 263140119.

Solute Probes of Conformational Changes in Open Complex Formation by E. coli RNA Polymerase at the λP_R Promoter: Evidence for Unmasking of the Active Site in the Isomerization Step and for Large-Scale Coupled Folding in the Subsequent Conversion to RP_o

Wayne S. Kontur, Ruth M. Saecker, Caroline A. Davis, Michael W. Capp, M. Thomas Record, Jr.

Biochemistry. Author manuscript; available in PMC 2009 Jan 27.

Published in final edited form as: Biochemistry. 2006 Feb 21; 45(7): 2161–2177. doi: 10.1021/bi051835v

PMCID:: PMC2631401

Abstract Article PDF–1.5M

Select item 256245520.

Signaling Mechanisms for Activation of Extracytoplasmic Function (ECF) Sigma Factors

Benjamin E. Brooks, Susan K. Buchanan

Biochim Biophys Acta. Author manuscript; available in PMC 2009 Sep 1.

Published in final edited form as: Biochim Biophys Acta. 2008 Sep; 1778(9): 1930–1945. Published online 2007 Jun 15. doi: 10.1016/j.bbamem.2007.06.005