PMC Links for GEO Profiles (Select 35527487) - PMC

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 33461162.

Mononuclear Iron Enzymes Are Primary Targets of Hydrogen Peroxide Stress

Adil Anjem, James A. Imlay

J Biol Chem. 2012 May 4; 287(19): 15544–15556. Published online 2012 Mar 12. doi: 10.1074/jbc.M111.330365

PMCID:: PMC3346116

Abstract Article PDF–2.7M

Select item 28814723.

Ligand-induced changes in the structure and dynamics of E. coli peptide deformylase

Carlos Amero, Douglas W. Byerly, Craig McElroy, Amber Simmons, Mark P. Foster

Biochemistry. Author manuscript; available in PMC 2010 Aug 18.

Published in final edited form as: Biochemistry. 2009 Aug 18; 48(32): 7595–7607. doi: 10.1021/bi900600b

PMCID:: PMC2881472

Abstract Article PDF–4.0M

Select item 26726144.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 26444215.

Delineation of Alternative Conformational States in E.coli Peptide Deformylase via Thermodynamic Studies for the Binding of Actinonin

Alexander K. Berg, D. K. Srivastava

Biochemistry. Author manuscript; available in PMC 2010 Feb 24.

Published in final edited form as: Biochemistry. 2009 Feb 24; 48(7): 1584–1594. doi: 10.1021/bi8019542

PMCID:: PMC2644421

Abstract Article PDF–1.0M

Select item 24306126.

Design and Synthesis of Macrocyclic Peptidyl Hydroxamates as Peptide Deformylase Inhibitors

Gang Shen, Jinge Zhu, Anthony M. Simpson, Dehua Pei

Bioorg Med Chem Lett. Author manuscript; available in PMC 2009 May 15.

Published in final edited form as: Bioorg Med Chem Lett. 2008 May 15; 18(10): 3060–3063. Published online 2007 Dec 10. doi: 10.1016/j.bmcl.2007.12.011

PMCID:: PMC2430612

Abstract Article PDF–518K

Select item 23124237.

Structural variation and inhibitor binding in polypeptide deformylase from four different bacterial species

Kathrine J. Smith, Chantal M. Petit, Kelly Aubart, Martin Smyth, Edward McManus, Jo Jones, Andrew Fosberry, Ceri Lewis, Michael Lonetto, Siegfried B. Christensen

Protein Sci. 2003 Feb; 12(2): 349–360. doi: 10.1110/ps.0229303

PMCID:: PMC2312423

Abstract Article PDF–750K

Select item 22921778.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 21445949.

Energetic rationale for an unexpected and abrupt reversal of guanidinium chloride-induced unfolding of peptide deformylase

Alexander K. Berg, Sumathra Manokaran, Daniel Eiler, Joel Kooren, Sanku Mallik, D.K. Srivastava

Protein Sci. 2008 Jan; 17(1): 11–15. doi: 10.1110/ps.073270608

PMCID:: PMC2144594

Abstract Article PDF–217K

Select item 168148210.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148111.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705212.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 39489214.

Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation.

D Mazel, S Pochet, P Marlière

EMBO J. 1994 Feb 15; 13(4): 914–923. doi: 10.1002/j.1460-2075.1994.tb06335.x

PMCID:: PMC394892

Summary Page Browse PDF–2.0M

Select item 31017715.

Peptide Deformylase Inhibitors as Antibacterial Agents: Identification of VRC3375, a Proline-3-Alkylsuccinyl Hydroxamate Derivative, by Using an Integrated Combinatorial and Medicinal Chemistry Approach

D. Chen, C. Hackbarth, Z. J. Ni, C. Wu, W. Wang, R. Jain, Y. He, K. Bracken, B. Weidmann, D. V. Patel, J. Trias, R. J. White, Z. Yuan

Antimicrob Agents Chemother. 2004 Jan; 48(1): 250–261. doi: 10.1128/AAC.48.1.250-261.2004

PMCID:: PMC310177

Abstract Article PDF–807K

Select item 20693816.

Evidence that peptide deformylase and methionyl-tRNA(fMet) formyltransferase are encoded within the same operon in Escherichia coli.

T Meinnel, S Blanquet

J Bacteriol. 1993 Dec; 175(23): 7737–7740. doi: 10.1128/jb.175.23.7737-7740.1993

PMCID:: PMC206938

Summary Page Browse PDF–775K

Select item 20621217.

Disruption of the gene for Met-tRNA(fMet) formyltransferase severely impairs growth of Escherichia coli.

J M Guillon, Y Mechulam, J M Schmitter, S Blanquet, G Fayat

J Bacteriol. 1992 Jul; 174(13): 4294–4301. doi: 10.1128/jb.174.13.4294-4301.1992

PMCID:: PMC206212

Summary Page Browse PDF–1.6M

Select item 19301118.

The Escherichia coli fmt gene, encoding methionyl-tRNA(fMet) formyltransferase, escapes metabolic control.

T Meinnel, J M Guillon, Y Mechulam, S Blanquet

J Bacteriol. 1993 Feb; 175(4): 993–1000. doi: 10.1128/jb.175.4.993-1000.1993

PMCID:: PMC193011

Summary Page Browse PDF–1.4M

Select item 17682119.

Enzymatic properties of Escherichia coli peptide deformylase.

T Meinnel, S Blanquet

J Bacteriol. 1995 Apr; 177(7): 1883–1887. doi: 10.1128/jb.177.7.1883-1887.1995

PMCID:: PMC176821

Summary PDF–181K

Select item 9032720.

Antibiotic Activity and Characterization of BB-3497, a Novel Peptide Deformylase Inhibitor

John M. Clements, R. Paul Beckett, Anthony Brown, Graham Catlin, Mario Lobell, Shilpa Palan, Wayne Thomas, Mark Whittaker, Stephen Wood, Sameeh Salama, Patrick J. Baker, H. Fiona Rodgers, Vladimir Barynin, David W. Rice, Michael G. Hunter

Antimicrob Agents Chemother. 2001 Feb; 45(2): 563–570. doi: 10.1128/AAC.45.2.563-570.2001

PMCID:: PMC90327

Abstract Article PDF–406K

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