PMC Links for GEO Profiles (Select 35527941) - PMC

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Items: 20

Select item 67006851.

Absolute requirement for polyamines for growth of Escherichia coli mutants (mnmE/G) defective in modification of the wobble anticodon of transfer-RNA

Christopher Keller, Manas Chattopadhyay, Herbert Tabor

FEMS Microbiol Lett. 2019 May; 366(10): fnz110. Published online 2019 May 23. doi: 10.1093/femsle/fnz110

PMCID:: PMC6700685

Abstract Article PDF–1.3M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39367423.

The output of the tRNA modification pathways controlled by the Escherichia coli MnmEG and MnmC enzymes depends on the growth conditions and the tRNA species

Ismaïl Moukadiri, M.-José Garzón, Glenn R. Björk, M.-Eugenia Armengod

Nucleic Acids Res. 2014 Feb; 42(4): 2602–2623. Published online 2013 Nov 26. doi: 10.1093/nar/gkt1228

PMCID:: PMC3936742

Abstract Article PDF–1.1M

Select item 28780874.

Stabilization of G Domain Conformations in the tRNA-modifying MnmE-GidA Complex Observed with Double Electron Electron Resonance Spectroscopy

Sabine Böhme, Simon Meyer, André Krüger, Heinz-Jürgen Steinhoff, Alfred Wittinghofer, Johann P. Klare

J Biol Chem. 2010 May 28; 285(22): 16991–17000. Published online 2010 Mar 30. doi: 10.1074/jbc.M109.096131

PMCID:: PMC2878087

Abstract Article PDF–2.7M

Select item 27908895.

Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions

Ismaïl Moukadiri, Silvia Prado, Julio Piera, Adrián Velázquez-Campoy, Glenn R. Björk, M.-Eugenia Armengod

Nucleic Acids Res. 2009 Nov; 37(21): 7177–7193. Published online 2009 Sep 18. doi: 10.1093/nar/gkp762

PMCID:: PMC2790889

Abstract Article PDF–1.6M

Select item 27865966.

Structure-Function Analysis of Escherichia coli MnmG (GidA), a Highly Conserved tRNA-Modifying Enzyme

Rong Shi, Magda Villarroya, Rafael Ruiz-Partida, Yunge Li, Ariane Proteau, Silvia Prado, Ismaïl Moukadiri, Alfonso Benítez-Páez, Rodrigo Lomas, John Wagner, Allan Matte, Adrián Velázquez-Campoy, M.-Eugenia Armengod, Miroslaw Cygler

J Bacteriol. 2009 Dec; 191(24): 7614–7619. Published online 2009 Oct 2. doi: 10.1128/JB.00650-09

PMCID:: PMC2786596

Abstract Article PDF–1.8M

Select item 26338707.

Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks

John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley

Genomics. Author manuscript; available in PMC 2010 Jan 1.

Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001

PMCID:: PMC2633870

Abstract Article PDF–1.9M

Select item 22921778.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 163532510.

Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli

Lucía Yim, Ismaïl Moukadiri, Glenn R. Björk, M.-Eugenia Armengod

Nucleic Acids Res. 2006 Nov; 34(20): 5892–5905. Published online 2006 Oct 24. doi: 10.1093/nar/gkl752

PMCID:: PMC1635325

Abstract Article PDF–629K

Select item 132520011.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405