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Select item 97235001.

The initiation factor 3 (IF3) residues interacting with initiator tRNA elbow modulate the fidelity of translation initiation and growth fitness in Escherichia coli

Jitendra Singh, Rishi Kumar Mishra, Shreya Ahana Ayyub, Tanweer Hussain, Umesh Varshney

Nucleic Acids Res. 2022 Nov 11; 50(20): 11712–11726. Published online 2022 Nov 18. doi: 10.1093/nar/gkac1053

PMCID:: PMC9723500

Abstract Article PDF–9.5M

Select item 71455772.

RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance

Indra Mani Sharma, Sarah A Woodson

Nucleic Acids Res. 2020 Jan 10; 48(1): 359–372. Published online 2019 Nov 15. doi: 10.1093/nar/gkz1065

PMCID:: PMC7145577

Abstract Article PDF–5.7M

Select item 68683933.

Ribosome assembly defects subvert initiation Factor3 mediated scrutiny of bona fide start signal

Himanshu Sharma, B Anand

Nucleic Acids Res. 2019 Dec 2; 47(21): 11368–11386. Published online 2019 Oct 5. doi: 10.1093/nar/gkz825

PMCID:: PMC6868393

Abstract Article PDF–4.1M

Select item 54242504.

Contributions of the N- and C-Terminal Domains of Initiation Factor 3 to Its Functions in the Fidelity of Initiation and Antiassociation of the Ribosomal Subunits

Shreya Ahana Ayyub, Divya Dobriyal, Umesh Varshney

J Bacteriol. 2017 Jun 1; 199(11): e00051-17. Prepublished online 2017 Mar 20. Published online 2017 May 9. doi: 10.1128/JB.00051-17

PMCID:: PMC5424250

Abstract Article PDF–1.4M

Select item 47029945.

Initiation factor 2 stabilizes the ribosome in a semirotated conformation

Clarence Ling, Dmitri N. Ermolenko

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15874–15879. Published online 2015 Dec 14. doi: 10.1073/pnas.1520337112

PMCID:: PMC4702994

Abstract Article PDF–1.0M

Select item 36486356.

Conformational selection of translation initiation factor 3 signals proper substrate selection

Margaret M. Elvekrog, Ruben L. Gonzalez, Jr.

Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Nov 1.

Published in final edited form as: Nat Struct Mol Biol. 2013 May; 20(5): 628–633. Published online 2013 Apr 14. doi: 10.1038/nsmb.2554

PMCID:: PMC3648635

Abstract Article PDF–1.3M

Select item 36473377.

Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA

Daoming Qin, Kurt Fredrick

Mol Microbiol. Author manuscript; available in PMC 2013 May 8.

Published in final edited form as: Mol Microbiol. 2009 Mar; 71(5): 1239–1249. Published online 2009 Jan 16. doi: 10.1111/j.1365-2958.2009.06598.x

PMCID:: PMC3647337

Abstract Article PDF–897K

Select item 24488148.

Quantifying changes in the thiol redox proteome upon oxidative stress in vivo

Lars I. Leichert, Florian Gehrke, Harini V. Gudiseva, Tom Blackwell, Marianne Ilbert, Angela K. Walker, John R. Strahler, Philip C. Andrews, Ursula Jakob

Proc Natl Acad Sci U S A. 2008 Jun 17; 105(24): 8197–8202. Published online 2008 Feb 14. doi: 10.1073/pnas.0707723105

PMCID:: PMC2448814

Abstract Article PDF–628K

Select item 22921779.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 226896210.

Requirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3

Jae-Ho Yoo, Uttam L RajBhandary

Mol Microbiol. 2008 Mar; 67(5): 1012–1026. doi: 10.1111/j.1365-2958.2008.06104.x

PMCID:: PMC2268962

Abstract Article PDF–644K

Select item 226292111.

Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA

Ashesh A. Saraiya, Tek N. Lamichhane, Christine S. Chow, John SantaLucia, Jr., Philip R. Cunningham

J Mol Biol. Author manuscript; available in PMC 2009 Feb 22.

Published in final edited form as: J Mol Biol. 2008 Feb 22; 376(3): 645–657. Published online 2007 Dec 7. doi: 10.1016/j.jmb.2007.11.102

PMCID:: PMC2262921

Abstract Article PDF–2.8M

Select item 208060512.

Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation

Daoming Qin, Nimo M. Abdi, Kurt Fredrick

RNA. 2007 Dec; 13(12): 2348–2355. doi: 10.1261/rna.715307

PMCID:: PMC2080605

Abstract Article PDF–220K

Select item 192489513.

Cold-stress-induced de novo expression of infC and role of IF3 in cold-shock translational bias

Anna Maria Giuliodori, Anna Brandi, Mara Giangrossi, Claudio O. Gualerzi, Cynthia L. Pon

RNA. 2007 Aug; 13(8): 1355–1365. doi: 10.1261/rna.455607

PMCID:: PMC1924895

Abstract Article PDF–2.0M

Select item 168148214.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148115.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049