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Items: 18

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
2.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
3.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K
4.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
5.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
6.
Polyamine stress at high pH in Escherichia coli K-12
Elizabeth Yohannes, Amy E Thurber, Jessica C Wilks, Daniel P Tate, Joan L Slonczewski
BMC Microbiol. 2005; 5: 59. Published online 2005 Oct 13. doi: 10.1186/1471-2180-5-59
PMCID:
PMC1274320
AbstractArticlePDF–843K
7.
Variant minihelix RNAs reveal sequence-specific recognition of the helical tRNA(Ser) acceptor stem by E.coli seryl-tRNA synthetase.
M E Saks, J R Sampson
EMBO J. 1996 Jun 3; 15(11): 2843–2849.
PMCID:
PMC450222
SummaryPage BrowsePDF–1.3M
8.
Cloning and characterization of the gene for Escherichia coli seryl-tRNA synthetase.
M Härtlein, D Madern, R Leberman
Nucleic Acids Res. 1987 Feb 11; 15(3): 1005–1017. doi: 10.1093/nar/15.3.1005
PMCID:
PMC340504
SummaryPage BrowsePDF–1.1M
9.
Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases.
S Cusack, M Härtlein, R Leberman
Nucleic Acids Res. 1991 Jul 11; 19(13): 3489–3498. doi: 10.1093/nar/19.13.3489
PMCID:
PMC328370
SummaryPage BrowsePDF–2.3M
10.
Contributions of discrete tRNA(Ser) domains to aminoacylation by E.coli seryl-tRNA synthetase: a kinetic analysis using model RNA substrates.
J R Sampson, M E Saks
Nucleic Acids Res. 1993 Sep 25; 21(19): 4467–4475. doi: 10.1093/nar/21.19.4467
PMCID:
PMC311177
SummaryPage BrowsePDF–1.7M
11.
Seryl-tRNA synthetase from Escherichia coli: implication of its N-terminal domain in aminoacylation activity and specificity.
F Borel, C Vincent, R Leberman, M Härtlein
Nucleic Acids Res. 1994 Aug 11; 22(15): 2963–2969. doi: 10.1093/nar/22.15.2963
Correction in:
Nucleic Acids Res. 1994 Oct 25; 22(21): 4552.
PMCID:
PMC310262
SummaryPage BrowsePDF–1.7M
12.
Seryl-tRNA synthetase from Escherichia coli: functional evidence for cross-dimer tRNA binding during aminoacylation.
C Vincent, F Borel, J C Willison, R Leberman, M Härtlein
Nucleic Acids Res. 1995 Apr 11; 23(7): 1113–1118. doi: 10.1093/nar/23.7.1113
PMCID:
PMC306818
SummaryPage BrowsePDF–1.1M
13.
Discrimination between glutaminyl-tRNA synthetase and seryl-tRNA synthetase involves nucleotides in the acceptor helix of tRNA.
M J Rogers, D Söll
Proc Natl Acad Sci U S A. 1988 Sep; 85(18): 6627–6631. doi: 10.1073/pnas.85.18.6627
PMCID:
PMC282030
SummaryPage BrowsePDF–1.1M
14.
Isolation and Characterization of a Regulatory Mutant of an Aminoacyl-Transfer Ribonucleic Acid Synthetase in Escherichia coli K-12
S. J. Clarke, B. Low, W. Konigsberg
J Bacteriol. 1973 Mar; 113(3): 1096–1103. doi: 10.1128/jb.113.3.1096-1103.1973
PMCID:
PMC251669
SummaryPage BrowsePDF–1.0M
15.
Biochemical Bases for the Antimetabolite Action of l-Serine Hydroxamate
Tetsuya Tosa, Lewis I. Pizer
J Bacteriol. 1971 Jun; 106(3): 972–982. doi: 10.1128/jb.106.3.972-982.1971
PMCID:
PMC248741
SummaryPage BrowsePDF–1.3M
16.
Isolation and Partial Characterization of Temperature-Sensitive Escherichia coli Mutants with Altered Leucyl- and Seryl-Transfer Ribonucleic Acid Synthetases
B. Low, F. Gates, T. Goldstein, D. Söll
J Bacteriol. 1971 Nov; 108(2): 742–750. doi: 10.1128/jb.108.2.742-750.1971
PMCID:
PMC247134
SummaryPage BrowsePDF–1.1M
17.
tRNA recognition and evolution of determinants in seryl-tRNA synthesis.
B Lenhard, O Orellana, M Ibba, I Weygand-Durasević
Nucleic Acids Res. 1999 Feb 1; 27(3): 721–729. doi: 10.1093/nar/27.3.721
PMCID:
PMC148239
SummaryPDF–227K
18.
Interaction of Escherichia coli tRNA(Ser) with its cognate aminoacyl-tRNA synthetase as determined by footprinting with phosphorothioate-containing tRNA transcripts.
D Schatz, R Leberman, F Eckstein
Proc Natl Acad Sci U S A. 1991 Jul 15; 88(14): 6132–6136. doi: 10.1073/pnas.88.14.6132
PMCID:
PMC52036
SummaryPage BrowsePDF–1.3M

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