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Items: 17

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
2.
Antagonistic functions between the RNA chaperone Hfq and an sRNA regulate sensitivity to the antibiotic colicin
Hubert Salvail, Marie-Pier Caron, Justine Bélanger, Eric Massé
EMBO J. 2013 Oct 16; 32(20): 2764–2778. Published online 2013 Sep 24. doi: 10.1038/emboj.2013.205
PMCID:
PMC3801439
AbstractArticlePDF–1.0M
3.
THE COLICIN Ia RECEPTOR, Cir, IS ALSO THE TRANSLOCATOR FOR COLICIN Ia
Karen S. Jakes, Alan Finkelstein
Mol Microbiol. Author manuscript; available in PMC 2012 Nov 8.
Published in final edited form as: Mol Microbiol. 2010 Feb; 75(3): 567–578. Published online 2009 Nov 17. doi: 10.1111/j.1365-2958.2009.06966.x
PMCID:
PMC3493618
AbstractArticlePDF–1.3M
4.
The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
Maude Guillier, Susan Gottesman
Nucleic Acids Res. 2008 Dec; 36(21): 6781–6794. Published online 2008 Oct 25. doi: 10.1093/nar/gkn742
PMCID:
PMC2588501
AbstractArticlePDF–1.9M
5.
Structure of colicin I receptor bound to the R-domain of colicin Ia: implications for protein import
Susan K Buchanan, Petra Lukacik, Sylvestre Grizot, Rodolfo Ghirlando, Maruf M U Ali, Travis J Barnard, Karen S Jakes, Paul K Kienker, Lothar Esser
EMBO J. 2007 May 16; 26(10): 2594–2604. Published online 2007 Apr 26. doi: 10.1038/sj.emboj.7601693
PMCID:
PMC1868905
AbstractArticlePDF–406K
6.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
7.
TCDB: the Transporter Classification Database for membrane transport protein analyses and information
Milton H. Saier, Jr, Can V. Tran, Ravi D. Barabote
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D181–D186. Published online 2005 Dec 28. doi: 10.1093/nar/gkj001
PMCID:
PMC1334385
AbstractArticlePDF–550K
8.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
9.
BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria
Frode S. Berven, Kristian Flikka, Harald B. Jensen, Ingvar Eidhammer
Nucleic Acids Res. 2004 Jul 1; 32(Web Server issue): W394–W399. doi: 10.1093/nar/gkh351
PMCID:
PMC441489
AbstractArticlePDF–105K
10.
Coordinate regulation by iron of the synthesis of phenolate compounds and three outer membrane proteins in Escherichia coli.
M A McIntosh, C F Earhart
J Bacteriol. 1977 Jul; 131(1): 331–339. doi: 10.1128/jb.131.1.331-339.1977
PMCID:
PMC235426
SummaryPage BrowsePDF–2.1M
11.
Use of cir-lac operon fusions to study transcriptional regulation of the colicin Ia receptor in Escherichia coli K-12.
P L Worsham, J Konisky
J Bacteriol. 1981 Jan; 145(1): 647–650. doi: 10.1128/jb.145.1.647-650.1981
PMCID:
PMC217319
SummaryPage BrowsePDF–590K
12.
Cloning and promoter identification of the iron-regulated cir gene of Escherichia coli.
D W Griggs, B B Tharp, J Konisky
J Bacteriol. 1987 Dec; 169(12): 5343–5352. doi: 10.1128/jb.169.12.5343-5352.1987
PMCID:
PMC213957
SummaryPage BrowsePDF–2.2M
13.
Evolutionary relationship between the TonB-dependent outer membrane transport proteins: nucleotide and amino acid sequences of the Escherichia coli colicin I receptor gene.
C D Nau, J Konisky
J Bacteriol. 1989 Feb; 171(2): 1041–1047. doi: 10.1128/jb.171.2.1041-1047.1989
Correction in:
J Bacteriol. 1989 Aug; 171(8): 4530.
PMCID:
PMC209699
SummaryPage BrowsePDF–1.3M
14.
Activation of expression of the Escherichia coli cir gene by an iron-independent regulatory mechanism involving cyclic AMP-cyclic AMP receptor protein complex.
D W Griggs, K Kafka, C D Nau, J Konisky
J Bacteriol. 1990 Jun; 172(6): 3529–3533. doi: 10.1128/jb.172.6.3529-3533.1990
PMCID:
PMC209174
SummaryPage BrowsePDF–966K
15.
Cir and Fiu proteins in the outer membrane of Escherichia coli catalyze transport of monomeric catechols: study with beta-lactam antibiotics containing catechol and analogous groups.
H Nikaido, E Y Rosenberg
J Bacteriol. 1990 Mar; 172(3): 1361–1367. doi: 10.1128/jb.172.3.1361-1367.1990
PMCID:
PMC208606
SummaryPage BrowsePDF–1.2M
16.
The lysP gene encodes the lysine-specific permease.
C Steffes, J Ellis, J Wu, B P Rosen
J Bacteriol. 1992 May; 174(10): 3242–3249. doi: 10.1128/jb.174.10.3242-3249.1992
PMCID:
PMC205992
SummaryPage BrowsePDF–1.6M
17.
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
AbstractArticlePDF–192K

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