PMC Links for GEO Profiles (Select 35546658) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39869235.

Collaborative Dynamic DNA Scanning by Nucleotide Excision Repair Proteins Investigated by Single-Molecule Imaging of Quantum-Dot-Labeled Proteins

Neil M. Kad, Hong Wang, Guy G. Kennedy, David M. Warshaw, Bennett Van Houten

Mol Cell. Author manuscript; available in PMC 2014 Apr 15.

Published in final edited form as: Mol Cell. 2010 Mar 12; 37(5): 702–713. doi: 10.1016/j.molcel.2010.02.003

PMCID:: PMC3986923

Abstract Article PDF–563K

Select item 32952666.

Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface

Alexandra M. Deaconescu, Anastasia Sevostyanova, Irina Artsimovitch, Nikolaus Grigorieff

Proc Natl Acad Sci U S A. 2012 Feb 28; 109(9): 3353–3358. Published online 2012 Feb 13. doi: 10.1073/pnas.1115105109

PMCID:: PMC3295266

Abstract Article PDF–1.0M

Select item 29462297.

Recognition and Incision of Cr(III) Ligand-Conjugated DNA Adducts by the Nucleotide Excision Repair Proteins UvrABC: Importance of the Cr(III)–Purine Moiety in the Enzymatic Reaction

Hirohumi Arakawa, Moon-shong Tang

Chem Res Toxicol. Author manuscript; available in PMC 2010 Sep 27.

Published in final edited form as: Chem Res Toxicol. 2008 Jun; 21(6): 1284–1289. Published online 2008 May 2. doi: 10.1021/tx800046y

PMCID:: PMC2946229

Abstract Article PDF–514K

Select item 28676718.

Controlled degradation by ClpXP protease tunes the levels of the excision repair protein UvrA to the extent of DNA damage

Mihaela Pruteanu, Tania A. Baker

Mol Microbiol. Author manuscript; available in PMC 2010 May 11.

Published in final edited form as: Mol Microbiol. 2009 Feb; 71(4): 912–924. Published online 2008 Dec 18. doi: 10.1111/j.1365-2958.2008.06574.x

PMCID:: PMC2867671

Abstract Article PDF–1.1M

Select item 27835689.

Proteolysis in the SOS response and metal homeostasis in Escherichia coli

Mihaela Pruteanu, Tania A. Baker

Res Microbiol. Author manuscript; available in PMC 2010 Nov 1.

Published in final edited form as: Res Microbiol. 2009 Nov; 160(9): 677–683. Published online 2009 Sep 10. doi: 10.1016/j.resmic.2009.08.012

PMCID:: PMC2783568

Abstract Article PDF–341K

Select item 275757910.

Nucleotide excision repair and recombination are engaged in repair of trans-4-hydroxy-2-nonenal adducts to DNA bases in Escherichia coli

Beata Janowska, Marek Komisarski, Paulina Prorok, Beata Sokołowska, Jarosław Kuśmierek, Celina Janion, Barbara Tudek

Int J Biol Sci. 2009; 5(6): 611–620. Published online 2009 Sep 23. doi: 10.7150/ijbs.5.611

PMCID:: PMC2757579

Abstract Article PDF–522K

Select item 272991611.

Alkylated DNA damage flipping bridges base and nucleotide excision repair

Julie L. Tubbs, Vitaly Latypov, Sreenivas Kanugula, Amna Butt, Manana Melikishvili, Rolf Kraehenbuehl, Oliver Fleck, Andrew Marriott, Amanda J. Watson, Barbara Verbeek, Gail McGown, Mary Thorncroft, Mauro F. Santibanez-Koref, Christopher Millington, Andrew S. Arvai, Matthew D. Kroeger, Lisa A. Peterson, David M. Williams, Michael G. Fried, Geoffrey P. Margison, Anthony E. Pegg, John A. Tainer

Nature. Author manuscript; available in PMC 2009 Dec 11.

Published in final edited form as: Nature. 2009 Jun 11; 459(7248): 808–813. doi: 10.1038/nature08076

PMCID:: PMC2729916

Abstract Article PDF–1.9M

Select item 271571112.

Nucleotide Excision Repair Is a Predominant Mechanism for Processing Nitrofurazone-Induced DNA Damage in Escherichia coli

Katherine R. Ona, Charmain T. Courcelle, Justin Courcelle

J Bacteriol. 2009 Aug; 191(15): 4959–4965. Published online 2009 May 22. doi: 10.1128/JB.00495-09

PMCID:: PMC2715711

Abstract Article PDF–711K

Select item 270014813.

DNA wrapping is required for DNA damage recognition in the Escherichia coli DNA nucleotide excision repair pathway

Hailin Wang, Meiling Lu, Moon-shong Tang, Bennett Van Houten, J. B. Alexander Ross, Michael Weinfeld, X. Chris Le

Proc Natl Acad Sci U S A. 2009 Aug 4; 106(31): 12849–12854. Published online 2009 Jun 22. doi: 10.1073/pnas.0902281106

PMCID:: PMC2700148

Abstract Article PDF–675K

Select item 268999514.

Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli

Ming-Ta Sung, Yen-Ting Lai, Chia-Ying Huang, Lien-Yang Chou, Hao-Wei Shih, Wei-Chieh Cheng, Chi-Huey Wong, Che Ma

Proc Natl Acad Sci U S A. 2009 Jun 2; 106(22): 8824–8829. Published online 2009 May 19. doi: 10.1073/pnas.0904030106

PMCID:: PMC2689995

Abstract Article PDF–1.0M

Select item 266661315.

Stimulation of UvrD Helicase by UvrAB

John Atkinson, Colin P. Guy, Chris J. Cadman, Geri F. Moolenaar, Nora Goosen, Peter McGlynn

J Biol Chem. 2009 Apr 3; 284(14): 9612–9623. doi: 10.1074/jbc.M808030200

PMCID:: PMC2666613

Abstract Article PDF–909K

Select item 266524116.

Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer

Koen Wagner, Geri Moolenaar, John van Noort, Nora Goosen

Nucleic Acids Res. 2009 Apr; 37(6): 1962–1972. Published online 2009 Feb 10. doi: 10.1093/nar/gkp071

PMCID:: PMC2665241

Abstract Article PDF–2.8M

Select item 253369217.

Recognition and Incision of Oxidative Intrastrand Cross-link Lesions by UvrABC Nuclease

Chunang Gu, Qibin Zhang, Zhengguan Yang, Yuesong Wang, Yue Zou, Yinsheng Wang

Biochemistry. Author manuscript; available in PMC 2008 Sep 12.

Published in final edited form as: Biochemistry. 2006 Sep 5; 45(35): 10739–10746. doi: 10.1021/bi060423z

PMCID:: PMC2533692

Abstract Article PDF–3.2M

Select item 239623318.

Cooperative damage recognition by UvrA and UvrB: Identification of UvrA residues that mediate DNA binding

Deborah L. Croteau, Matthew J. DellaVecchia, Lalith Perera, Bennett Van Houten

DNA Repair (Amst) Author manuscript; available in PMC 2009 Mar 1.

Published in final edited form as: DNA Repair (Amst). 2008 Mar 1; 7(3): 392–404. Published online 2008 Jan 11. doi: 10.1016/j.dnarep.2007.11.013

PMCID:: PMC2396233

Abstract Article PDF–2.2M

Select item 239623219.

The C-terminal Zinc Finger of UvrA Does Not Bind DNA Directly but Regulates Damage-specific DNA Binding

Deborah L. Croteau, Matthew J. DellaVecchia, Hong Wang, Rachelle J. Bienstock, Mark A. Melton, Bennett Van Houten

J Biol Chem. Author manuscript; available in PMC 2008 May 26.

Published in final edited form as: J Biol Chem. 2006 Sep 8; 281(36): 26370–26381. Published online 2006 Jul 7. doi: 10.1074/jbc.M603093200

PMCID:: PMC2396232

Abstract Article PDF–2.4M

Select item 229217720.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

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