PMC Links for GEO Profiles (Select 35546747) - PMC

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Items: 20

Select item 54614041.

Spatial Distribution and Ribosome-Binding Dynamics of EF-P in Live Escherichia coli

Sonisilpa Mohapatra, Heejun Choi, Xueliang Ge, Suparna Sanyal, James C. Weisshaar

mBio. 2017 May-Jun; 8(3): e00300-17. Published online 2017 Jun 6. doi: 10.1128/mBio.00300-17

PMCID:: PMC5461404

Abstract Article PDF–2.3M

Select item 50218042.

Maintenance of Transcription-Translation Coupling by Elongation Factor P

Sara Elgamal, Irina Artsimovitch, Michael Ibba

mBio. 2016 Sep-Oct; 7(5): e01373-16. Published online 2016 Sep 13. doi: 10.1128/mBio.01373-16

PMCID:: PMC5021804

Abstract Article PDF–1.6M

Select item 48902013.

Essential structural elements in tRNA^Pro for EF-P-mediated alleviation of translation stalling

Takayuki Katoh, Ingo Wohlgemuth, Masanobu Nagano, Marina V. Rodnina, Hiroaki Suga

Nat Commun. 2016; 7: 11657. Published online 2016 May 24. doi: 10.1038/ncomms11657

PMCID:: PMC4890201

Abstract Article PDF–733K

Select item 48350384.

High Precision Analysis of Translational Pausing by Ribosome Profiling in Bacteria Lacking EFP

Christopher J. Woolstenhulme, Nicholas R. Guydosh, Rachel Green, Allen R. Buskirk

Cell Rep. Author manuscript; available in PMC 2016 Apr 18.

Published in final edited form as: Cell Rep. 2015 Apr 7; 11(1): 13–21. Published online 2015 Apr 2. doi: 10.1016/j.celrep.2015.03.014

PMCID:: PMC4835038

Abstract Article PDF–1.0M

Select item 44454665.

Maintenance of Protein Synthesis Reading Frame by EF-P and m¹G37-tRNA

Howard B. Gamper, Isao Masuda, Milana Frenkel-Morgenstern, Ya-Ming Hou

Nat Commun. Author manuscript; available in PMC 2015 Nov 26.

Published in final edited form as: Nat Commun. 2015; 6: 7226. Published online 2015 May 26. doi: 10.1038/ncomms8226

PMCID:: PMC4445466

Abstract Article PDF–2.0M

Select item 41406416.

EF-P Dependent Pauses Integrate Proximal and Distal Signals during Translation

Sara Elgamal, Assaf Katz, Steven J. Hersch, David Newsom, Peter White, William Wiley Navarre, Michael Ibba

PLoS Genet. 2014 Aug; 10(8): e1004553. Published online 2014 Aug 21. doi: 10.1371/journal.pgen.1004553

PMCID:: PMC4140641

Abstract Article PDF–1.0M

Select item 37808737.

Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P

Lauri Peil, Agata L. Starosta, Jürgen Lassak, Gemma C. Atkinson, Kai Virumäe, Michaela Spitzer, Tanel Tenson, Kirsten Jung, Jaanus Remme, Daniel N. Wilson

Proc Natl Acad Sci U S A. 2013 Sep 17; 110(38): 15265–15270. Published online 2013 Sep 3. doi: 10.1073/pnas.1310642110

PMCID:: PMC3780873

Abstract Article PDF–1.2M

Select item 32964538.

Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome

Gregor Blaha, Robin E. Stanley, Thomas A. Steitz

Science. Author manuscript; available in PMC 2012 Mar 7.

Published in final edited form as: Science. 2009 Aug 21; 325(5943): 966–970. doi: 10.1126/science.1175800

PMCID:: PMC3296453

Abstract Article PDF–1.8M

Select item 29352429.

Crystallization and preliminary X-ray crystallographic study of GenX, a lysyl-tRNA synthetase paralogue from Escherichia coli, in complex with translation elongation factor P

Tomomi Sumida, Tatsuo Yanagisawa, Ryohei Ishii, Shigeyuki Yokoyama

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1; 66(Pt 9): 1115–1118. Published online 2010 Aug 28. doi: 10.1107/S1744309110032008

PMCID:: PMC2935242

Abstract Article PDF–309K

Select item 279218310.

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

Gemma C. Langridge, Minh-Duy Phan, Daniel J. Turner, Timothy T. Perkins, Leopold Parts, Jana Haase, Ian Charles, Duncan J. Maskell, Sarah E. Peters, Gordon Dougan, John Wain, Julian Parkhill, A. Keith Turner

Genome Res. 2009 Dec; 19(12): 2308–2316. doi: 10.1101/gr.097097.109

PMCID:: PMC2792183

Abstract Article PDF–1024K

Select item 179730911.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 47072014.

Crystal structure of elongation factor P from Thermus thermophilus HB8

Kyoko Hanawa-Suetsugu, Shun-ichi Sekine, Hiroaki Sakai, Chie Hori-Takemoto, Takaho Terada, Satoru Unzai, Jeremy R. H. Tame, Seiki Kuramitsu, Mikako Shirouzu, Shigeyuki Yokoyama

Proc Natl Acad Sci U S A. 2004 Jun 29; 101(26): 9595–9600. Published online 2004 Jun 21. doi: 10.1073/pnas.0308667101

PMCID:: PMC470720

Abstract Article PDF–600K

Select item 38869915.

Identification of a soluble protein that stimulates peptide bond synthesis.

B R Glick, M C Ganoza

Proc Natl Acad Sci U S A. 1975 Nov; 72(11): 4257–4260. doi: 10.1073/pnas.72.11.4257

PMCID:: PMC388699

Summary Page Browse PDF–695K

Select item 37431716.

Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli

Jaya K. Kumar, Stanley Tabor, Charles C. Richardson

Proc Natl Acad Sci U S A. 2004 Mar 16; 101(11): 3759–3764. Published online 2004 Mar 2. doi: 10.1073/pnas.0308701101

PMCID:: PMC374317

Abstract Article PDF–397K

Select item 32912717.

Cloning, sequencing and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis.

H Aoki, S L Adams, D G Chung, M Yaguchi, S E Chuang, M C Ganoza

Nucleic Acids Res. 1991 Nov 25; 19(22): 6215–6220. doi: 10.1093/nar/19.22.6215

PMCID:: PMC329127

Summary Page Browse PDF–1.3M

Select item 30699718.

Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.

V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels, F R Blattner

Nucleic Acids Res. 1995 Jun 25; 23(12): 2105–2119. doi: 10.1093/nar/23.12.2105

PMCID:: PMC306997

Summary Page Browse PDF–2.5M

Select item 12708419.

Oxazolidinone Antibiotics Target the P Site on Escherichiacoli Ribosomes

Hiroyuki Aoki, Lizhu Ke, Susan M. Poppe, Toni J. Poel, Elizabeth A. Weaver, Robert C. Gadwood, Richard C. Thomas, Dean L. Shinabarger, M. Clelia Ganoza

Antimicrob Agents Chemother. 2002 Apr; 46(4): 1080–1085. doi: 10.1128/AAC.46.4.1080-1085.2002