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Select item 83516301.

Topoisomerase I Essentiality, DnaA-Independent Chromosomal Replication, and Transcription-Replication Conflict in Escherichia coli

J. Krishna Leela, Nalini Raghunathan, J. Gowrishankar

J Bacteriol. 2021 Sep; 203(17): e00195-21. Prepublished online 2021 Jun 14. Published online 2021 Aug 9. doi: 10.1128/JB.00195-21

PMCID:: PMC8351630

Abstract Article PDF–1.4M

Select item 71408292.

Supercoiling, R-Loops, Replication and the Functions of Bacterial Type 1A Topoisomerases

Julien Brochu, Émilie-Vlachos Breton, Marc Drolet

Genes (Basel) 2020 Mar; 11(3): 249. Published online 2020 Feb 27. doi: 10.3390/genes11030249

PMCID:: PMC7140829

Abstract Article PDF–2.0M

Select item 69544333.

Point mutations in topoisomerase I alter the mutation spectrum in E. coli and impact the emergence of drug resistance genotypes

Amit Bachar, Elad Itzhaki, Shmuel Gleizer, Melina Shamshoom, Ron Milo, Niv Antonovsky

Nucleic Acids Res. 2020 Jan 24; 48(2): 761–769. Published online 2019 Nov 28. doi: 10.1093/nar/gkz1100

PMCID:: PMC6954433

Abstract Article PDF–1.7M

Select item 61602234.

Topoisomerases I and III inhibit R-loop formation to prevent unregulated replication in the chromosomal Ter region of Escherichia coli

Julien Brochu, Émilie Vlachos-Breton, Sarah Sutherland, Makisha Martel, Marc Drolet

PLoS Genet. 2018 Sep; 14(9): e1007668. Published online 2018 Sep 17. doi: 10.1371/journal.pgen.1007668

PMCID:: PMC6160223

Abstract Article PDF–6.1M

Select item 59929235.

Dependence of Transcription-Coupled DNA Supercoiling on Promoter Strength in Escherichia coli Topoisomerase I Deficient Strains

Xiaoduo Zhi, Fenfei Leng

Gene. Author manuscript; available in PMC 2018 Jun 8.

Published in final edited form as: Gene. 2013 Feb 10; 514(2): 82–90. Published online 2012 Nov 29. doi: 10.1016/j.gene.2012.11.011

PMCID:: PMC5992923

Abstract Article PDF–3.5M

Select item 57144926.

Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli

Aalap Mogre, Reshma T. Veetil, Aswin Sai Narain Seshasayee

G3 (Bethesda) 2017 Dec; 7(12): 3955–3966. Published online 2017 Oct 18. doi: 10.1534/g3.117.300284

PMCID:: PMC5714492

Abstract Article PDF–1.6M

Select item 48385447.

Investigating direct interaction between Escherichia coli topoisomerase I and RecA

Srikanth Banda, Purushottam Babu Tiwari, Yesim Darici, Yuk-Ching Tse-Dinh

Gene. Author manuscript; available in PMC 2017 Jul 1.

Published in final edited form as: Gene. 2016 Jul 1; 585(1): 65–70. Published online 2016 Mar 19. doi: 10.1016/j.gene.2016.03.013

PMCID:: PMC4838544

Abstract Article PDF–893K

Select item 46788168.

Structural basis for suppression of hypernegative DNA supercoiling by E. coli topoisomerase I

Kemin Tan, Qingxuan Zhou, Bokun Cheng, Zhongtao Zhang, Andrzej Joachimiak, Yuk-Ching Tse-Dinh

Nucleic Acids Res. 2015 Dec 15; 43(22): 11031–11046. Published online 2015 Oct 20. doi: 10.1093/nar/gkv1073

PMCID:: PMC4678816

Abstract Article PDF–13M

Select item 45760879.

Antimicrobial Susceptibility and SOS-Dependent Increase in Mutation Frequency Are Impacted by Escherichia coli Topoisomerase I C-Terminal Point Mutation

Jenny Yang, Thirunavukkarasu Annamalai, Bokun Cheng, Srikanth Banda, Rakhi Tyagi, Yuk-Ching Tse-Dinh

Antimicrob Agents Chemother. 2015 Oct; 59(10): 6195–6202. Prepublished online 2015 Jul 27. Published online 2015 Sep 18. doi: 10.1128/AAC.00855-15

PMCID:: PMC4576087

Abstract Article PDF–1.0M

Select item 412385510.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 348823211.

Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways

Ksenia Terekhova, Kathryn H. Gunn, John F. Marko, Alfonso Mondragón

Nucleic Acids Res. 2012 Nov; 40(20): 10432–10440. Published online 2012 Aug 24. doi: 10.1093/nar/gks780

PMCID:: PMC3488232

Abstract Article PDF–2.3M

Select item 331390212.

On the viability of Escherichia coli cells lacking DNA topoisomerase I

Anna Stockum, Robert G Lloyd, Christian J Rudolph

BMC Microbiol. 2012; 12: 26. Published online 2012 Feb 28. doi: 10.1186/1471-2180-12-26

PMCID:: PMC3313902

Abstract Article PDF–1.2M

Select item 290586113.

Asp to Asn substitution at the first position of the DxD TOPRIM motif of recombinant bacterial topoisomerase I is extremely lethal to E. coli

Bokun Cheng, Thirunavakkarasu Annamalai, Elena Sorokin, Maria Abrenica, Sandra Aedo, Yuk-Ching Tse-Dinh

J Mol Biol. Author manuscript; available in PMC 2010 Jul 19.

Published in final edited form as: J Mol Biol. 2009 Jan 16; 385(2): 558–567. Published online 2008 Nov 5. doi: 10.1016/j.jmb.2008.10.073

PMCID:: PMC2905861

Abstract Article PDF–1.7M

Select item 287599914.

Depletion of RNase HI activity in Escherichia coli lacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation

Valentine Usongo, Flora Nolent, Patrick Sanscartier, Cynthia Tanguay, Sonia Broccoli, Imad Baaklini, Karl Drlica, Marc Drolet

Mol Microbiol. Author manuscript; available in PMC 2010 May 25.

Published in final edited form as: Mol Microbiol. 2008 Aug; 69(4): 968–981. Published online 2008 Jun 28. doi: 10.1111/j.1365-2958.2008.06334.x

PMCID:: PMC2875999

Abstract Article PDF–2.6M

Select item 273794915.

Genetic Analysis of Repair and Damage Tolerance Mechanisms for DNA-Protein Cross-Links in Escherichia coli

Amir M. H. Salem, Toshiaki Nakano, Minako Takuwa, Nagisa Matoba, Tomohiro Tsuboi, Hiroaki Terato, Kazuo Yamamoto, Masami Yamada, Takehiko Nohmi, Hiroshi Ide

J Bacteriol. 2009 Sep; 191(18): 5657–5668. Published online 2009 Jul 17. doi: 10.1128/JB.00417-09

PMCID:: PMC2737949

Abstract Article PDF–1.5M

Select item 272560516.

Hydroxyl Radicals Are Involved in Cell Killing by the Bacterial Topoisomerase I Cleavage Complex

I-Fen Liu, Thirunavukkarasu Annamalai, Jeanette H. Sutherland, Yuk-Ching Tse-Dinh

J Bacteriol. 2009 Aug; 191(16): 5315–5319. Published online 2009 Jun 12. doi: 10.1128/JB.00559-09

PMCID:: PMC2725605

Abstract Article PDF–711K

Select item 267261417.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 264729718.

Bacterial topoisomerase I as a target for discovery of antibacterial compounds

Yuk-Ching Tse-Dinh

Nucleic Acids Res. 2009 Feb; 37(3): 731–737. Published online 2008 Nov 28. doi: 10.1093/nar/gkn936

PMCID:: PMC2647297

Abstract Article PDF–1.0M

Select item 257666019.

Hypernegative Supercoiling Inhibits Growth by Causing RNA Degradation

Imad Baaklini, Valentine Usongo, Flora Nolent, Patrick Sanscartier, Chadi Hraiky, Karl Drlica, Marc Drolet

J Bacteriol. 2008 Nov; 190(22): 7346–7356. Published online 2008 Sep 12. doi: 10.1128/JB.00680-08

PMCID:: PMC2576660

Abstract Article PDF–1.0M

Select item 234738220.

SOS Induction by Stabilized Topoisomerase IA Cleavage Complex Occurs via the RecBCD Pathway

Jeanette H. Sutherland, Bokun Cheng, I-Fen Liu, Yuk-Ching Tse-Dinh

J Bacteriol. 2008 May; 190(9): 3399–3403. Published online 2008 Feb 29. doi: 10.1128/JB.01674-07

PMCID:: PMC2347382

Abstract Article PDF–340K

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