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Select item 54545331.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 40827103.

G₆₇₃ could be a novel mutational hot spot for intragenic suppressors of pheS5 lesion in Escherichia coli

Thangaraj Ponmani, M Hussain Munavar

Microbiologyopen. 2014 Jun; 3(3): 369–382. Published online 2014 May 8. doi: 10.1002/mbo3.161

PMCID:: PMC4082710

Abstract Article PDF–1.8M

Select item 32853554.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Abstract Article PDF–1.2M

Select item 30470725.

Idiosyncrasy and identity in the prokaryotic phe-system: Crystal structure of E. coli phenylalanyl-tRNA synthetase complexed with phenylalanine and AMP

Inbal Mermershtain, Igal Finarov, Liron Klipcan, Naama Kessler, Haim Rozenberg, Mark G Safro

Protein Sci. 2011 Jan; 20(1): 160–167. Published online 2010 Nov 16. doi: 10.1002/pro.549

PMCID:: PMC3047072

Abstract Article PDF–362K

Select item 26726146.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 22921777.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 16814828.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520010.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 115696611.

Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA

Natalia Ivanova, Michael Y. Pavlov, Elli Bouakaz, Måns Ehrenberg, Lovisa Holmberg Schiavone

Nucleic Acids Res. 2005; 33(11): 3529–3539. Published online 2005 Jun 21. doi: 10.1093/nar/gki666

PMCID:: PMC1156966

Abstract Article PDF–832K

Select item 55421412.

Functional mutants of phenylalanine transfer RNA from Escherichia coli.

J Vacher, M Springer, R H Buckingham

EMBO J. 1985 Feb; 4(2): 509–513. doi: 10.1002/j.1460-2075.1985.tb03657.x

PMCID:: PMC554214

Summary Page Browse PDF–892K

Select item 53305713.

Post-transfer editing in vitro and in vivo by the β subunit of phenylalanyl-tRNA synthetase

Hervé Roy, Jiqiang Ling, Michael Irnov, Michael Ibba

EMBO J. 2004 Nov 24; 23(23): 4639–4648. Published online 2004 Nov 4. doi: 10.1038/sj.emboj.7600474

PMCID:: PMC533057

Abstract Article PDF–383K

Select item 42683114.

Phenylalanyl-tRNA Synthetase and Isoleucyl-tRNA^Phe: A Possible Verification Mechanism for Aminoacyl-tRNA

Michael Yarus

Proc Natl Acad Sci U S A. 1972 Jul; 69(7): 1915–1919. doi: 10.1073/pnas.69.7.1915

PMCID:: PMC426831

Summary Page Browse PDF–1002K

Select item 41355115.

Selection for active E. coli tRNA(Phe) variants from a randomized library using two proteins.

E T Peterson, J Blank, M Sprinzl, O C Uhlenbeck

EMBO J. 1993 Jul; 12(7): 2959–2967. doi: 10.1002/j.1460-2075.1993.tb05958.x

PMCID:: PMC413551

Summary Page Browse PDF–1.7M

Select item 32837016.

Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases.

S Cusack, M Härtlein, R Leberman

Nucleic Acids Res. 1991 Jul 11; 19(13): 3489–3498. doi: 10.1093/nar/19.13.3489

PMCID:: PMC328370

Summary Page Browse PDF–2.3M

Select item 32152117.

New Class of Bacterial Phenylalanyl-tRNA Synthetase Inhibitors with High Potency and Broad-Spectrum Activity

Dieter Beyer, Hein-Peter Kroll, Rainer Endermann, Guido Schiffer, Stephan Siegel, Marcus Bauser, Jens Pohlmann, Michael Brands, Karl Ziegelbauer, Dieter Haebich, Christine Eymann, Heike Brötz-Oesterhelt

Antimicrob Agents Chemother. 2004 Feb; 48(2): 525–532. doi: 10.1128/AAC.48.2.525-532.2004

PMCID:: PMC321521

Abstract Article PDF–153K

Select item 28647918.

Presence of the hypermodified nucleotide N6-(delta 2-isopentenyl)-2-methylthioadenosine prevents codon misreading by Escherichia coli phenylalanyl-transfer RNA.

R K Wilson, B A Roe

Proc Natl Acad Sci U S A. 1989 Jan; 86(2): 409–413. doi: 10.1073/pnas.86.2.409

PMCID:: PMC286479

Summary Page Browse PDF–1.1M

Select item 27752519.

Protein and Nucleic Acid Synthesis in Two Mutants of Escherichia coli with Temperature-Sensitive Aminoacyl Ribonucleic Acid Synthetases

Lia Eidlic, Frederick C. Neidhardt

J Bacteriol. 1965 Mar; 89(3): 706–711. doi: 10.1128/jb.89.3.706-711.1965

PMCID:: PMC277525

Summary Page Browse PDF–1002K

Select item 25212220.

Selection of Temperature-sensitive Activating Enzyme Mutants in Escherichia coli

Samuel Kaplan, Deborah Anderson

J Bacteriol. 1968 Mar; 95(3): 991–997. doi: 10.1128/jb.95.3.991-997.1968

PMCID:: PMC252122

Summary Page Browse PDF–890K

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